XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTTATCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCTACTTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCG
ATTTGGGTTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGATGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTC
CCATTTATTGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAACTTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCTACTTTCTC
CTCTATAAGTTTCAGTGTCTCCGGTTTTATGTGGAGTTCCTTAATCCACT
TAGATTTGACCTTAGTACAAGGAGATAGTAATAGATCAATTCTCAATCTT
CTACATGATAATAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC
TTTTTTCCACTGGATGGTTTTAGCTTCTTGTTGAAGATCAAGTGACTATA
GGTGTGTGGGTTCATTTCTGGGTCTATAATTCTATTCCATTGATCTACTT
TTCTGTTGTTATATGAATACCATGCATTTTTTATCACAATTGCTCTGTAG
TAAAGCTTTAGGTCAAGCCTCGTGATTCCACCAGAGGTTCTTATATCCTT
GAGAAGAGTTTTTGCAATCCTAAGTTTTTTGTTATTCCAGATGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGAGTTCAAGGCCAACCTGGTCTAC
AAAGTGAGTTCCAGGACAGCCAGGCAGGGCTACACAGAGAAACCCTGCCT
TGAAAAAACCAAAAAACAAATAAAAAAAACAACAAAAAAATTGTAGTCTT
GTGGTTTTTAAAATCTCTAACTTGTTTAATTCTGTGTGGGGGTGGGGGTT
GTTATTCTTATTTATAAATTCACCAAGTATGTGCAGGGACTAGAAGGGGA
CTAAAGTAACAGGCAGTGCCTCACAATATGTATGTATGCTGGGAAGTGAA
TCCTGGTTCTGTGAAAGAGCAGTAAGCATTCTTAAACACTATGGTATTTG
TCTAACTCTTGTATTTTTAAATGTTTAATAAATATTATTAGAATACTTTC
TTTTGAAAATAGTGAAAAGTACCAACAGACCTGGCATTCTTTTAAACCGA
ATGAGGCACTAAAACCAGGATTTATATAATAAGGTAGGTGAGGTTTCTAT
AGGTTCCACAAGGCAAGCAAGAATCTACAGGATTATAAATGACTGGTTTA
TACTCTACAACCTCTTGGAAATGTGGGTAAAAACTCTCCACACTGACAGA
GGTGGAAAGTAAACCCCAATGAAAATAATCACGACTTCTTACCCCTACTT
CCTCCGAAAAAATTGCCAAAGTAAACCCCCCGTCCATCCTCTATTTTTAT
TTCATACCTCG

Query= MSMg01no349_k15.g1 MSMg01no349_k15.g1 CHROMAT_FILE:
MSMg01no349_k15.g1 PHD_FILE: MSMg01no349_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:20 2005
         (482 letters)



>mm_chr3_78055680_78056560
          Length = 881

 Score =  893 bits (462), Expect = 0.0
 Identities = 480/490 (97%), Gaps = 9/490 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagttcaaggccaacctggtctacaaagtgagttccaggacagccaggcagggctacac 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 193 tgagttcaaggccaacctggtctacaaaatgagttccaggacagccaggcagggctacac 252

                                                                       
Query: 61  agagaaaccctgccttgaaaaaaccaaaaaacaaat----aaaaaaaac----aacaaaa 112
           ||||||||||||||||||||||||||||||||||||    |||||||||    |||||||
Sbjct: 253 agagaaaccctgccttgaaaaaaccaaaaaacaaatcaaaaaaaaaaacaaaaaacaaaa 312

                                                                       
Query: 113 aaattgtagtcttgtggtttttaaaatctctaacttgtttaattctgtgtgggggtgggg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaattgtagtcttgtggtttttaaaatctctaacttgtttaattctgtgtgggggtgggg 372

                                                                       
Query: 173 gttgttattcttatttataaattcaccaagtatgtgcagggactagaaggggactaaagt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gttgttattcttatttataaattcaccaagtatgtgcagggactagaaggggactaaagt 432

                                                                       
Query: 233 aacaggcagtgcctcacaatatgtatgtatgctgggaagtgaatcctggttctgtgaaag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aacaggcagtgcctcacaatatgtatgtatgctgggaagtgaatcctggttctgtgaaag 492

                                                                       
Query: 293 agcagtaagcattcttaaacactatggtatttgtctaactcttgtatttttaaatgttta 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agcagtaagcattcttaaacactatggtatttgtctaactcttgtatttttaaatgttta 552

                                                                       
Query: 353 ataaatattattagaatactttcttttgaaaatagtgaaaagtaccaacagacctggcat 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ataaatattattagaatactttcttttgaaaatagtgaaaagtaccaacagacctggcat 612

                                                                       
Query: 413 tcttttaaaccgaatgaggcactaaaaccaggatttatataataaggtaggtgaggtttc 472
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 613 tcttttaaaccgaatgaggcactaaaac-aggatttatataataaggtaggtgaggtttc 671

                     
Query: 473 tataggttcc 482
           ||||||||||
Sbjct: 672 tataggttcc 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space:   411112
Effective search space used:   411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)