BAC Information

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BAC

Clone NameMSMg01-350E15
Chromosome3 (Build37)
Map Location 82,367,931 - 82,411,007
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350E15.T7 (MSMg01no350_e15.b1)MSMg01-350E15.TJ (MSMg01no350_e15.g1)
ACCAG461937AG461938
length760761
length of high quality
(start - end)		542 (74 - 615)491 (78 - 568)
definitionCHROMAT_FILE: MSMg01no350_e15.b1 PHD_FILE: MSMg01no350_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:10 2005CHROMAT_FILE: MSMg01no350_e15.g1 PHD_FILE: MSMg01no350_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,367,931 - 82,368,472)(82,410,517 - 82,411,007)
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAANATTACAGCCAAGGCTTTCAATGTACCCATTTCAATTT
ACTCACACCATTGAGATCAGACATAAATGAAAACCTTCTTTTCCTAATTC
TTTTCACACATTCCTTGGTGCCATTCCATCGTTTCCCAACAGTAATGACC
AAGAGAGAGAACTACAGATTCTCAGGATCTTTTGGCAACTCTGTCATCTG
GAATCTTGTTATTACTTTTCGATTTTCTGGCAGCATAAAAAACAACTATA
ATAAGGCTTTTGACTGGTTCATTCATCTTGCTCCTGGTCTGCGGGTACAT
CCAAATCTGATAGAGAAATCACTCAGCCTCCAGATGCCACTTCCTTAATT
AAGTTAGCCTGAAAGAGAAAAAGGATATGGAAGATGTGAACATCACCTTC
TGTTACTTTGTATTACACAGTATATATTATCACATGTCTTACTGTAGTTT
CCAGTGGTGGAGCCTAAGACAGGTGCTTCCAGACTCTTGGCTTTAGGGCC
AAAGAACTGAAAATAGGAGCAAGAGAAGCCAGATGACTTTATTCAGAATG
ACACAATAGTGCAGATTACAGAGGTACACACTGTCGGAATTGACATCAGG
TCATATACTAAGACAACTAGATGCCCCAATTATTGTTTAAAGCTTTTACT
TTTTAATGGCATGAGGCATTTGATTATTAATGGGGTGCACATGGACATAT
TTTTGTTTCN

NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGCCTGATCTTGAAGCTTAG
GGATTGGTGAGATTTTCTACTTAGAGATCGATGGGTTTCATGCTCAGAAA
TTGGTAGGTTTTCATGCTCAGAGATTAGTGGGGTTTGATAATTTTTTAAA
ACCTGATGTGGGTTGATGAAGGCTTTGGATATAAACTACTCTAGAGACAG
TTTCAGAGAACAGTGTCTGCTTTATTGGATGTCTATGGCCTGCGATTGCT
GAGTACCTTACCTTGGATTGGTCAGTGAGTGCTTATCCCACCTATAGCTC
TATGCAGAAGAAGTACATGAAGAGGTGTGGAGAGTATAGACTGCAGGCCA
AGTACTGGCTACTCACGATACTTTAGAACACAATGTTCTGGCTCCGGGAG
CATAGCATGCAGGGCTTCTTATTTAAAAGTGCACTATTCCAAGTAAGCTA
ACCACCATGTCATATCTGTATTTTCCCTTACAGCATATGTATTCATATAT
ACACATGCACATTTAAAATATACACATTCATATCTACATATATGTGTATG
TATGTATATACTTATACTTATTTATATGCATACATATATTTGGGCAAAGG
ATTTGAATTCGTTTTGCCTTTCAAGTCGACCATGGATTTTACGGTTCTGA
AAAATGCTGGTCCCTCTCACTTATTTAGTAAAGTCGCGACTTTTCTTTTG
GCGCATTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_e15.b1 MSMg01no350_e15.b1 CHROMAT_FILE:
MSMg01no350_e15.b1 PHD_FILE: MSMg01no350_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
         (542 letters)



>mm_chr3_82367731_82368672
          Length = 942

 Score = 1048 bits (542), Expect = 0.0
 Identities = 542/542 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctttcaatgtacccatttcaatttactcacaccattgagatcagacataaatgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctttcaatgtacccatttcaatttactcacaccattgagatcagacataaatgaaaa 260

                                                                       
Query: 61  ccttcttttcctaattcttttcacacattccttggtgccattccatcgtttcccaacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcttttcctaattcttttcacacattccttggtgccattccatcgtttcccaacagt 320

                                                                       
Query: 121 aatgaccaagagagagaactacagattctcaggatcttttggcaactctgtcatctggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgaccaagagagagaactacagattctcaggatcttttggcaactctgtcatctggaa 380

                                                                       
Query: 181 tcttgttattacttttcgattttctggcagcataaaaaacaactataataaggcttttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgttattacttttcgattttctggcagcataaaaaacaactataataaggcttttga 440

                                                                       
Query: 241 ctggttcattcatcttgctcctggtctgcgggtacatccaaatctgatagagaaatcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggttcattcatcttgctcctggtctgcgggtacatccaaatctgatagagaaatcact 500

                                                                       
Query: 301 cagcctccagatgccacttccttaattaagttagcctgaaagagaaaaaggatatggaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagcctccagatgccacttccttaattaagttagcctgaaagagaaaaaggatatggaag 560

                                                                       
Query: 361 atgtgaacatcaccttctgttactttgtattacacagtatatattatcacatgtcttact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtgaacatcaccttctgttactttgtattacacagtatatattatcacatgtcttact 620

                                                                       
Query: 421 gtagtttccagtggtggagcctaagacaggtgcttccagactcttggctttagggccaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagtttccagtggtggagcctaagacaggtgcttccagactcttggctttagggccaaa 680

                                                                       
Query: 481 gaactgaaaataggagcaagagaagccagatgactttattcagaatgacacaatagtgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaactgaaaataggagcaagagaagccagatgactttattcagaatgacacaatagtgca 740

             
Query: 541 ga 542
           ||
Sbjct: 741 ga 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_e15.g1 MSMg01no350_e15.g1 CHROMAT_FILE:
MSMg01no350_e15.g1 PHD_FILE: MSMg01no350_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:10 2005
         (491 letters)



>mm_chr3_82410222_82411112
          Length = 891

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggcctgatcttgaagcttagggattggtgagattttctacttagagatcgatgggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgtggcctgatcttgaagcttagggattggtgagattttctacttagagatcgatgggtt 727

                                                                       
Query: 61  tcatgctcagaaattggtaggttttcatgctcagagattagtggggtttgataatttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tcatgctcagaaattggtaggttttcatgctcagagattagtggggtttgataatttttt 667

                                                                       
Query: 121 aaaacctgatgtgggttgatgaaggctttggatataaactactctagagacagtttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaaacctgatgtgggttgatgaaggctttggatataaactactctagagacagtttcaga 607

                                                                       
Query: 181 gaacagtgtctgctttattggatgtctatggcctgcgattgctgagtaccttaccttgga 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 606 gaacagtgtctgctttattggaagtctatggcctgcgattgctgagtaccttaccttgga 547

                                                                       
Query: 241 ttggtcagtgagtgcttatcccacctatagctctatgcagaagaagtacatgaagaggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttggtcagtgagtgcttatcccacctatagctctatgcagaagaagtacatgaagaggtg 487

                                                                       
Query: 301 tggagagtatagactgcaggccaagtactggctactcacgatactttagaacacaatgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggagagtatagactgcaggccaagtactggctactcacgatactttagaacacaatgtt 427

                                                                       
Query: 361 ctggctccgggagcatagcatgcagggcttcttatttaaaagtgcactattccaagtaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctggctccgggagcatagcatgcagggcttcttatttaaaagtgcactattccaagtaag 367

                                                                       
Query: 421 ctaaccaccatgtcatatctgtattttcccttacagcatatgtattcatatatacacatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctaaccaccatgtcatatctgtattttcccttacagcatatgtattcatatatacacatg 307

                      
Query: 481 cacatttaaaa 491
           |||||||||||
Sbjct: 306 cacatttaaaa 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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