Query= MSMg01no350_f15.b1 MSMg01no350_f15.b1 CHROMAT_FILE:
MSMg01no350_f15.b1 PHD_FILE: MSMg01no350_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:15 2005
(523 letters)
>mm_chr3_119259524_119260445
Length = 922
Score = 980 bits (507), Expect = 0.0
Identities = 519/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 1 cttgtaaaggtcaaaactagcttgatatctgctttgtttatatcatttctcccctagatt 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cttgtaaaggtcaaaactagcttgatatctgctctgtttatatcatttctcccctagatt 260
Query: 61 cagatgcatgtcccagctctagccctacctcatgtaggcagtttctctaaggctgaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatgcatgtcccagctctagccctacctcatgtaggcagtttctctaaggctgaaaca 320
Query: 121 aaagagtgtttaatcataaaatgtattaactaattggtgaagcctattataaaaaaatct 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 aaagagtgtttaatcataaaatgtattaactaattggtgaagcctattat-aaaaaatct 379
Query: 181 ccctaatgactctgtggtgtcaagaaagaggcctgtcaagagagtatccgtgctacaact 240
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccctaattactctgcggtgtcaagaaagaggcctgtcaagagagtatccgtgctacaact 439
Query: 241 gtgacagcaaaatgcaacacttggaagtcttcctcccctgggctttttctttgatttctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtgacagcaaaatgcaacacttggaagtcttcctcccctgggctttttctttgatttctg 499
Query: 301 cctttaattctgataagaagtgacagtagttggataaaacaatcaaaacttgagttgaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctttaattctgataagaagtgacagtagttggataaaacaatcaaaacttgagttgaag 559
Query: 361 agcttataaaccttctgacacttcaataaaccaaaagccgatatgaaaccagaaaagcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agcttataaaccttctgacacttcaataaaccaaaagccgatatgaaaccagaaaagcag 619
Query: 421 ttttattttagctctggctagccacacaccacagacaagacatccatctgcagagctccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttattttagctctggctagccacacaccacagacaagacatccatctgcagagctccg 679
Query: 481 agctatctccttgatataatattttactaactctcatttcaca 523
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agctatctccttgatataatattttactaactctcatttcaca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 922
Length adjustment: 10
Effective length of query: 513
Effective length of database: 912
Effective search space: 467856
Effective search space used: 467856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_f15.g1 MSMg01no350_f15.g1 CHROMAT_FILE:
MSMg01no350_f15.g1 PHD_FILE: MSMg01no350_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:15 2005
(485 letters)
>mm_chr3_119431542_119432427
Length = 886
Score = 901 bits (466), Expect = 0.0
Identities = 481/486 (98%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 1 attgcttctgttttgaaacttttcttgggtgaaatttgagcagtctttttattaaaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 attgcttctgttttgaaacttttcttgggtgaaatttgagcagtctttttattaaaaggt 595
Query: 61 aatatttattaaaattcaggttagacttttaaactgtctcttgaatctataacaatttac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatatttattaaaattcagcttagacttttaaactgtctcttgaatctataacaatttac 535
Query: 121 atttgccttttaattcacaattattttaggttcatttaaataattctcttaatgacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atttgccttttaattcacaattattttaggttcatttaaataattctcttaatgacattt 475
Query: 181 catgacctaaagctttatctaaatatttaacatcaaatttgctcccttataaaacacaga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tatgacctaaagctttatctaaatatttaacatcaaatttgctcccttataaaacacaga 415
Query: 241 tgtaaaaacctggagtatttcttttaaacaattatgttttaatatttagtattttgaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgtaaaaacctggagtatttcttttaaacaattatgttttaatatttagtattttgaata 355
Query: 301 aattctctacttattaatttttttgataattttgttagagtattgaattgttatcatggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aattctctacttattaatttttttgataattttgttagagtattgaattgttatcatggg 295
Query: 361 -aaaaaatgtatcttaaaagaagaaaaagagttttcccaaaagtaaagtaagtactaagt 419
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 294 aaaaaaatgtatcttaaaagaagaaaaagagttttcccaaaagtgaagtaagtactaagt 235
Query: 420 atacttagataaaaatcttgttaatagtttaatgatttattattatttttttaaataaaa 479
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 atacttagatagaaatcttgttaatagtttaatgatttattattatttttttaaataaaa 175
Query: 480 caggaa 485
||||||
Sbjct: 174 caggaa 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
