NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAATAAATTCCGATCAGTTTTGTTGAAATATGATAACTT
CGGAACTAGATGGGGAGATTATAAGTTCACCTTGGCTTTGTTTAAAGGTA
AGAATATAAAGAAACAATAAGGAATGTGTAACATTGATGTTAATGGCTGC
TACATGTTAAGCGCTCACTAAATGATAGCTGTTAAGATATGATTATCCCT
GTCATTCTTATTAAGAAAGAGTTTTAATGTGTCTTCAGATGGTGAAGAAT
CTGTCTGTGATCTCTCAGGCCTCTGTGTGTCTATGCAGTGAGCTCATGGC
ATCCTCAGCATCGCCTAACCTTTATTTACTCTTACCTCCAAATGCAAGAA
GCATCACCATAAGGAGCCAAGCTTGTGTAGTCATCTGTACAAATTAGACA
ACGGCAAAGAATTGTGTAAGGCAAGGTATATTAAGAAAGTAAAAAAATAT
ATATTTAGTTAATTTCAAGGAATGGTTGAAATAAAATTGATAAGGCATAT
TGGTACTAACCTGACAAGGGCATACATGTAAGCAAAGACTTTTAAAATGT
ATCTATGTAGATCACTAATTCTCAATCCAGAAGTCCAAATTCTTTTTGAG
AATCTAATGAATCTTTTCTCCGAGGGTACCTAACACCCTGGCGAAAATGT
AGATCCATTGTATGTTTTATATGCATGGCCAAAATTCCGTTATGAGGGAA
TA

NNNNNNCCGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTTGACTTCATTACCT
TCCAGCAAATTGAGCTACAAAACATTAAAGGAATCATTTATACACATTCA
AAAAATACAACTTGCTTATATTTCATCTGTATGTTGGATCCTTGTTAAAG
GTTTGTTGTAGCAAAAACAATCTGTTTCAATTAATATTTGCTTTTATTTG
AGTATGTTCTAGGAAAAGGACCAAATAATTCTGAAATTATTTAAGAAAGA
AATTTTTGCGTGCTGTTAACAGTTGATATGTTTTATAATGCTAACTGGTG
CTAACTTGACCCGTCCAGCAGGTCCAGTTATTCGAGGATCTCGAGGGGAC
CTCCTCCTAAGAACCAAATGGGGGGTAGAGAGAGACGAGGGTCTTGTACG
AATAACGACACGGAAACCGTTCTGAAGTTATATCAAGACCCCAATGTATT
GAGAAAGGTCCAAGGTTTAAATGCACAAGCAAAGGNNGAAGTACAGATAC
TTATCAGTGGGAGGGGTAGGGCAATACAAGCCAAAGGAGAAATACTTATT
GGGAGGTGGGCCAATAGAAATTCTTTTTTTTGAAAGCTACCCTCCGAAAC
AAGCAACTTGTTGTTTTTAAGTTGGGTTCAGAAATTCTTTGATAACTCTG
GGTTGGAATACTCTCCGTATTTTTTCTATTCTTTTCTTCTTCTGTTCCT

Query= MSMg01no350_g14.b1 MSMg01no350_g14.b1 CHROMAT_FILE:
MSMg01no350_g14.b1 PHD_FILE: MSMg01no350_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:19 2005
         (480 letters)



>mm_chr3_72838245_72839124
          Length = 880

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttttgttgaaatatgataacttcggaactagatggggagattataagttcaccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagttttgttgaaatatgataacttcggaactagatggggagattataagttcaccttgg 621

                                                                       
Query: 61  ctttgtttaaaggtaagaatataaagaaacaataaggaatgtgtaacattgatgttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctttgtttaaaggtaagaatataaagaaacaataaggaatgtgtaacattgatgttaatg 561

                                                                       
Query: 121 gctgctacatgttaagcgctcactaaatgatagctgttaagatatgattatccctgtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctgctacatgttaagcgctcactaaatgatagctgttaagatatgattatccctgtcat 501

                                                                       
Query: 181 tcttattaagaaagagttttaatgtgtcttcagatggtgaagaatctgtctgtgatctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcttattaagaaagagttttaatgtgtcttcagatggtgaagaatctgtctgtgatctct 441

                                                                       
Query: 241 caggcctctgtgtgtctatgcagtgagctcatggcatcctcagcatcgcctaacctttat 300
           |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 440 caggcctctgtgtggctatgcagtgagctcatggcatcctcagcatcccctaacctttat 381

                                                                       
Query: 301 ttactcttacctccaaatgcaagaagcatcaccataaggagccaagcttgtgtagtcatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttactcttacctccaaatgcaagaagcatcaccataaggagccaagcttgtgtagtcatc 321

                                                                       
Query: 361 tgtacaaattagacaacggcaaagaattgtgtaaggcaaggtatattaagaaagtaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtacaaattagacaacggcaaagaattgtgtaaggcaaggtatattaagaaagtaaaaa 261

                                                                       
Query: 421 aatatatatttagttaatttcaaggaatggttgaaataaaattgataaggcatattggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatatatatttagttaatttcaaggaatggttgaaataaaattgataaggcatattggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_g14.g1 MSMg01no350_g14.g1 CHROMAT_FILE:
MSMg01no350_g14.g1 PHD_FILE: MSMg01no350_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:19 2005
         (456 letters)



>mm_chr3_72658970_72659825
          Length = 856

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcttgacttcattaccttccagcaaattgagctacaaaacattaaaggaatcattta 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 agttcttgacttcattaccttccagcaaattgagctacaaaatattaaaggaatcattta 260

                                                                       
Query: 61  tacacattcaaaaaatacaacttgcttatatttcatctgtatgttggatccttgttaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacattcaaaaaatacaacttgcttatatttcatctgtatgttggatccttgttaaag 320

                                                                       
Query: 121 gtttgttgtagcaaaaacaatctgtttcaattaatatttgcttttatttgagtatgttct 180
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatgttgtaacaaaaacaatctgtttcaattaatatttgcttttatttgagtatgttct 380

                                                                       
Query: 181 aggaaaaggaccaaataattctgaaattatttaagaaagaaatttttgcgtgctgttaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaaaggaccaaataattctgaaattatttaagaaagaaatttttgcgtgctgttaac 440

                                                
Query: 241 agttgatatgttttataatgctaactggtgctaactt 277
           |||||| ||||||||||||||||||||||||||||||
Sbjct: 441 agttgacatgttttataatgctaactggtgctaactt 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)