BAC Information

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BAC

Clone NameMSMg01-350H06
Chromosome3 (Build37)
Map Location 68,974,114 - 68,974,506
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
Downstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350H06.T7 (MSMg01no350_h06.b1)MSMg01-350H06.TJ (MSMg01no350_h06.g1)
ACCAG462063AG462064
length781796
length of high quality
(start - end)
397 (80 - 476)303 (91 - 393)
definitionCHROMAT_FILE: MSMg01no350_h06.b1 PHD_FILE: MSMg01no350_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:23 2005CHROMAT_FILE: MSMg01no350_h06.g1 PHD_FILE: MSMg01no350_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCATTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAG
AGGATCCGCGGAATTCACAAGGTTCCCACAAAAAAAAAGTTAGAGAGAGA
GAGAGAGAGAGCATTCCCATTGCTTCACAGCATCTGATGAAGACAGGCAG
AGCTGTAAGAGTGGACTTCCTGCTCCTGGGAGAGGCACAATCCACTCCTT
TGAGGTTTCAAAATCTTCCTTCACTCCAGGCAAACTTGGAGCATTGCTCC
TATAAAATGATGCTGGATGACTGGCAAGTTGAGATTCCCAAAGGCCAACG
TGGGGAAAAAGTGGAAGGCAATAACAGAGCCATGAGCTGACATCAGCTTG
GCTTAGCTAGCTGTCTGCTCTTTGACCATCAAGTTAATTACTCAGATCTT
TATAACTTCTCATTCATGAGAGAGAGAGAAGACCTATGCTGTGTGCATCA
TTGGATCAGTAGAACAACAGAAGCTGCCAAGGTTTTTAAAACTTTAAATA
CTATGCTAAGAATGAAGGTCAGTGGAACACTTGTCCTGCGGGCTCAGAGA
ACTAGGTTCCATCCCCAACACCTCTTAAAATTAGTGGGGCTGGTTCCCCT
GGAAAATGGAGGCTAAAGGATCTCGAATTTCAAAATTTCTTCTCCACCCC
TTAAAGTTTAACAATCCCCTCTCTCGAGGGAAGGGTTCATCTGAAAATGT
TTTTATTTCAAAATCTCTTACTCTCTACGAGGGGTATCCTCTTGTTTTTC
TCTCCTTTTCTTTATGTCTTCGTCCCTTCAG
NACAAAATTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATCAATT
TTAAAGATAAAAATGCAGGGTGTTATTTCAATGTTCTTGTATCTATTGAG
AATTAGTTTGTGTTCGAGCATGTGGCCAATTTCAGAGAAAGTTCTATGAG
GTGCAGAGAAGGTATTTCCTTTTGTGTTTGGGTGAAATGTCCTGTAACTA
CCTATTAAGTCCATGTAAAGTCTGTTAGCTCTAGTATTTCCTGCTTAGTT
TGTGTCTGGATGACCTGTCTATTGTTGAGACTGAGGTATTGATTTGATTT
AAACCATAGTAGTAGTATTTTGTTTTGTTTTGTTTTGTTTTTTGCTTGAG
ACAGGTTTCTTTCTGAGTATTCTTGTCCCCCCCGTACTTTTATCTGTATA
TTCGCCTTTCCCTTTAATTCTTATTTCTTTCTTGATTTTTTTTTTTTCTA
CTTCAAAGTTCTGATATTAATATTCCTCTCCCCCATATTTATTATCCCCT
TATATATTGTTTTCCTCTTATCCCTTAGTCTTCTTTTTTCCATTTTTTTT
ATATTTTCTCCTTTTTTCTTTTTCTCTCTTCTCCACTTTTTCTTTTATAT
TTCCTTATTATATTTTTTTATTTTTCTCTTTTTTGTCACATACCTCTCTC
CTTTCCCATCCCCATTTTTTTTTTTACTTAATTTTCCTCTTCCCTTCCCT
TTTTCTCTCCCTTTTTTTTTTTTTTTTTTACCGCTCTTCTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_h06.b1 MSMg01no350_h06.b1 CHROMAT_FILE:
MSMg01no350_h06.b1 PHD_FILE: MSMg01no350_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:23 2005
         (397 letters)



>mm_chr3_68973910_68974706
          Length = 797

 Score =  733 bits (379), Expect = 0.0
 Identities = 391/397 (98%), Gaps = 4/397 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaagttagagagagagagagagagagcattcccattgcttcacagcatctgatg 60
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 205 aaaaaaaaagttagagagagagagagag----cattcccattgcttcacagcatctgatg 260

                                                                       
Query: 61  aagacaggcagagctgtaagagtggacttcctgctcctgggagaggcacaatccactcct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aagacaggcagagctgtaagagtggacttcctgctcctgggagaggcacagtccactcct 320

                                                                       
Query: 121 ttgaggtttcaaaatcttccttcactccaggcaaacttggagcattgctcctataaaatg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttgaggtttcaaaatcttccttcactccaggcaaacttggagcattgctcctataaaacg 380

                                                                       
Query: 181 atgctggatgactggcaagttgagattcccaaaggccaacgtggggaaaaagtggaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctggatgactggcaagttgagattcccaaaggccaacgtggggaaaaagtggaaggc 440

                                                                       
Query: 241 aataacagagccatgagctgacatcagcttggcttagctagctgtctgctctttgaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataacagagccatgagctgacatcagcttggcttagctagctgtctgctctttgaccat 500

                                                                       
Query: 301 caagttaattactcagatctttataacttctcattcatgagagagagagaagacctatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagttaattactcagatctttataacttctcattcatgagagagagagaagacctatgc 560

                                                
Query: 361 tgtgtgcatcattggatcagtagaacaacagaagctg 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtgtgcatcattggatcagtagaacaacagaagctg 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)