NNNNNTTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTGCTATGTTCCCCCAATGTTTCATTATGGACACAGGCT
CATGTAGTAAAAGGTGACCTCAAATTGCTTTGTAGGTCCCTACCTGGCTG
TGTCTCTGCCTCTGCCCTTACCCCTGCCTCTTAAGTACTGAGATTAGAGA
TATGCAACACCCTGTTTTATGAGGTACTGGGATGGAACTTGGGACTTATG
TATTTTTGCATTTTAAGCAAGTCCTCTACCAAATAATTTACATCCCCAAC
CCATTAGCCAAAAATTGGTTGTGAGTGTTCTCTTTCGGCTTTTGAGCAAA
GAAACTAATGGCCCCTAGGCTTTCCATTTTGATGCATGCGTGTGCATGTG
CTCCTGTATGTGTGTGTGTGTGCGCGCGCGTGTGTGTTTTNTTTTCNNTT
CCTTTCTTCCCTTTTTTTTTTCCTTTTTTCTTTTCCCTTTTTCCCTCCCT
CCTTTTCCTTTCTTCCTCCTTTTTTCTTTTCTCTTCTTTTCTTCCTCCTC
CCCTCCCTTTTCCTTCCTCCTTTCCTCTTCCTCCTTTTCTCTTTCTCTCC
CTTTTTTTCCCCTCCTTTTTTTTTTCCTTTCTCTCCCTCTCTTTTTTTTC
CTTCTCCCCTTTCTCTCTTCCTTTTTCTTTTTTTTCTTCCTTCCCCCTCT
CCTTTCTTTCCCCTTCCCCTTCCTCTCTTTTTCTCTCNTTTCCCTTTCTC
CCCTTTTCTTTCTTTTTCCTTCTTTCTCTT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCTGGACTAACTCAAGGAC
TGTTGGCTGACATTGTCCAGCCTTGTCTGATTGACAACTGCTCACCCTTT
CCATCCTCCTGGCGGCTGACGGGTTCCATTTTTTTGCCATTGAAAATGCC
ATTTTGGAAATGAGTTCTCCCCTAGAGGATACATTAAGGTAACTCTGCTT
GTGGTAACCTTCTTCCCTCAAAGGCTCATTATTTAAATTATTGCTCATCA
TTAGCAGCCCTAGTTCCCCTGGTAGCTATGAGATGTGATGACATTTTCAG
GCCTCCCAGAGCATCTTGGGAATGATACTGCTAACTGAGGCTGCTCCCAC
TGAAGTAGTATCCACAGGGATTGGTGGGAGGACTTGCCTACCATCCTATC
AAGTAGACTGCNGAGAGAGAAAGAGAGAGACTGACNGAGAGGGAGACTGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTNT
TTTCTCTCTATTTCTGCACCATGGTTCTGTTCTGAAAAAAACTTCTTATT
CTGCTCTTCTTGAAAAAAAAAAAAGACCGAAGGAACCTGGGTTTCCCCCT
GGGATACCTTTAAAAAGTAATTATAAAACTACTCCCTCCTTTCTTCTTTT
TGCTTATTTCATTTTTTTCCGCTCTCATTTTCTCTTTCTCTTTTTTTTAT
ATTTTTCCTCTCGTGTCTGC

Query= MSMg01no350_j22.b1 MSMg01no350_j22.b1 CHROMAT_FILE:
MSMg01no350_j22.b1 PHD_FILE: MSMg01no350_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:36 2005
         (349 letters)



>mm_chr3_66293784_66294532
          Length = 749

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatgtttcattatggacacaggctcatgtagtaaaaggtgacctcaaattgctttgtag 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatgtttcattatggacacagtctcatgtagtaaaaggtgacctcaaattgctttgtag 260

                                                                       
Query: 61  gtccctacctggctgtgtctctgcctctgcccttacccctgcctcttaagtactgagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtccctacctggctgtgtctctgcctctgcccttacccctgcctcttaagtactgagatt 320

                                                                       
Query: 121 agagatatgcaacaccctgttttatgaggtactgggatggaacttgggacttatgtattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatatgcaacaccctgttttatgaggtactgggatggaacttgggacttatgtattt 380

                                                                       
Query: 181 ttgcattttaagcaagtcctctaccaaataatttacatccccaacccattagccaaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgcattttaagcaagtcctctaccaaataatttacatccccaacccattagccaaaaat 440

                                                                       
Query: 241 tggttgtgagtgttctctttcggcttttgagcaaagaaactaatggcccctaggctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttgtgagtgttctctttcggcttttgagcaaagaaactaatggcccctaggctttcc 500

                                                          
Query: 301 attttgatgcatgcgtgtgcatgtgctcctgtatgtgtgtgtgtgtg 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attttgatgcatgcgtgtgcatgtgctcctgtatgtgtgtgtgtgtg 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no350_j22.g1 MSMg01no350_j22.g1 CHROMAT_FILE:
MSMg01no350_j22.g1 PHD_FILE: MSMg01no350_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:36 2005
         (456 letters)



>mm_chr3_66505832_66506687
          Length = 856

 Score =  832 bits (430), Expect = 0.0
 Identities = 449/456 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggctggactaactcaaggactgttggctgacattgtccagccttgtctgattgacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agggctggactaactcaaggactgttggctgacattgtccagccttgtctgattgacaac 524

                                                                       
Query: 61  tgctcaccctttccatcctcctggcggctgacgggttccatttttttgccattgaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgctcaccctttccatcctcctggcggctgacgggttccatttttttgccattgaaaatg 464

                                                                       
Query: 121 ccattttggaaatgagttctcccctagaggatacattaaggtaactctgcttgtggtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ccattttggaaatgagttctcccctagaggatacattaaggtaactctgcttgtggtaac 404

                                                                       
Query: 181 cttcttccctcaaaggctcattatttaaattattgctcatcattagcagccctagttccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cttcttccctcaaaggctcattatttaaattattgctcatcattagcagccctagttccc 344

                                                                       
Query: 241 ctggtagctatgagatgtgatgacattttcaggcctcccagagcatcttgggaatgatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctggtagctatgagatgtgatgacattttcaggcctcccagagcatcttgggaatgatac 284

                                                                       
Query: 301 tgctaactgaggctgctcccactgaagtagtatccacagggattggtgggaggacttgcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 283 tgctaactgaggctgctcccactgaagtagtatccacagggattggtgggagaacttgcc 224

                                                                       
Query: 361 taccatcctatcaagtagactgcngagagagaaagagagagactgacngagagggagact 420
           ||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| 
Sbjct: 223 taccatcctatcaagtagactgcagagagagaaagagagagacagacagagagggagaca 164

                                               
Query: 421 gagagagagagagagagagagagagagagagagaga 456
           || |||||||||||| ||||||||||||||||||||
Sbjct: 163 gacagagagagagagggagagagagagagagagaga 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)