BAC Information

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BAC

Clone NameMSMg01-350L06
Chromosome3 (Build37)
Map Location 154,115,757 - 154,116,140
singlet/doubletsinglet
Overlap geneLOC100040810
Upstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8
Downstream geneLOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350L06.T7 (MSMg01no350_l06.b1)MSMg01-350L06.TJ (MSMg01no350_l06.g1)
ACCAG462252AG462253
length789780
length of high quality
(start - end)
343 (77 - 419)380 (91 - 470)
definitionCHROMAT_FILE: MSMg01no350_l06.b1 PHD_FILE: MSMg01no350_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:43 2005CHROMAT_FILE: MSMg01no350_l06.g1 PHD_FILE: MSMg01no350_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCTTGTTATTATTTGCTGGCGCTATACGACTCACTATTTCCAGAGG
ATCCGCGGAATTCAGTTAATTATCAATGAGAAGCCCTGCCTTAAAATATA
GGCAGCACGGTGAGCTGGGGTGCTGAACTGCACAGAAAGGGGAAAGTGGG
CGGAGCTGAGCGCCAACATTCACAGGTCTCTGCTTCCTGGCCACAGATGC
TGTGTGACCAGCTGCCTTTCATCCAGCATCCATGATTCTTTCTCATGGTG
GCCTACAGCATTAAACTGTGAGCCAAAATAAATCACACACGCACGCACGC
ACACACACACACGCACACGCACACATTCTGTTACCTTCTAGTCCCAGAAG
TTCAGGAAGTCTTCCAGCAACCACTGAGCTAATTTTAAAGCACAGTGGCA
GCGATATGGTGAACCCCAGAGACACACACAGATGTGGCCTCTTATCACAA
GGGCTCGCAGCTTACATGTTACATGGAAAGACTACTCTGATGCTATGTTG
CTCTATTTTCAATTCTATGTTAAACAGACCCTTCTACTACATTATCCCAT
CCCCTATCCTCAACATCCTGTTCTCTACCCCGCGCTCTATTCACCATCTC
TTTATTGCTCTTCTGTCCTCCTCTCACCATTATGTTTTTACCATCACCTC
CTCCTATTCTCACCTCCCCTCTTTCCTTCACGCCCCCACCCATCCATCCC
TTTTTTACCCACTATTAACTTTCACACTCTTACTTCTAATATCCTCTTTT
CTTTTTCAACCCTTTCCCTTATTCCCCTCTTTCCCTATT
NAAATTTTTACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTCTTC
ACATAAAAGTTCAGCTTGAACTTTAAGTCCCTACCCACAAGAAAAGTCCA
TCCAAGATTTCACATGACTGACATACAACGTTTTCAGATCTGTTCAGCTG
CATAATCGTAGATTTTTAACCACCATGCCACAGTCCCGGATTCTTTGGGT
CATGGTGTGAGTCCAGCCAACTGTCATGGTTTTTTTTTTCTTTCCTATGA
ATTCCTCTAAAATAAATTATATGAGTATCCAAGTTCTCAGAGCTCATGGT
AGACACTAGTGTCTGGTAACTGTCACTTTCCTATGGAGAAGAACTTCATG
ACCCCAGCACTCTGCCCACTGGGGAGCTGGCCATCTTTTTCTGATTCTTT
ATCTCTTTATCTCTTTTACTGTGGGATCTTTACTATGCTGAGAGCCTATC
CAAACCTCTTCCCCACCCTCTTGCTTAATTTGATACAAGCCCTGCAGCCC
ACATGTCTTATAAGTAAAAATTGAGAACATTTTCTCCTGTTTTTCGAATA
TATTTTATGTATTTGTCTTCTATTTTTTTATCCAATTTTTCAATACTTCC
ATTACTTCTCGCTTTTATATTTTTTTCTCTTCTTTTTTATCTCTTGCTTC
GTTTTTCTTTTGCATATTTCTCCTTCATCACTGTTTTGACTTCTCTTTTT
TTCTTTTTTTTTTCCCTCTCTTTTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_l06.g1 MSMg01no350_l06.g1 CHROMAT_FILE:
MSMg01no350_l06.g1 PHD_FILE: MSMg01no350_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:43 2005
         (380 letters)



>mm_chr3_154115557_154116340
          Length = 784

 Score =  692 bits (358), Expect = 0.0
 Identities = 376/384 (97%), Gaps = 4/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatttcttcacataaaagttcagcttgaactttaagtccctacccacaagaaaagtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatttcttcacataaaagttcagcttgaactttaagtccctacccacaagaaaagtcca 260

                                                                       
Query: 61  tccaagatttcacatgactgacatacaacgttttcagatctgttcagctgcataatcgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tccaagatttcacatgactgacatacaacgttttcagatctgttcagctgcataatcata 320

                                                                       
Query: 121 gatttttaaccaccatgccacagtcccggattctttgggtcatggtgtgagtccagccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttttaaccaccatgccacagtcccggattctttgggtcatggtgtgagtccagccaa 380

                                                                       
Query: 181 ctgtcatggtttttttttt----ctttcctatgaattcctctaaaataaattatatgagt 236
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtcatggttttttttttttttctttcctatgaattcctctaaaataaattatatgagt 440

                                                                       
Query: 237 atccaagttctcagagctcatggtagacactagtgtctggtaactgtcactttcctatgg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccaagttctcagagctcatggtagacactagtgtctggtaactgtcactttcctatgg 500

                                                                       
Query: 297 agaagaacttcatgaccccagcactctgcccactggggagctggccatctttttctgatt 356
           |||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 501 agaagaacttcatgaccccagcactctgtccactggggagctgtctatctttttctgatt 560

                                   
Query: 357 ctttatctctttatctcttttact 380
           ||||||||||||||||||||||||
Sbjct: 561 ctttatctctttatctcttttact 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 784
Length adjustment: 9
Effective length of query: 371
Effective length of database: 775
Effective search space:   287525
Effective search space used:   287525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)