BAC Information

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BAC

Clone NameMSMg01-350O16
Chromosome3 (Build37)
Map Location 12,399,013 - 12,399,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999, EG621965
Downstream geneLOC100039798, EG668033, LOC668037, LOC100039823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O16.T7 (MSMg01no350_o16.b1)MSMg01-350O16.TJ (MSMg01no350_o16.g1)
ACCAG462413AG462414
length1,597799
length of high quality
(start - end)
---342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no350_o16.b1 PHD_FILE: MSMg01no350_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:01 2005CHROMAT_FILE: MSMg01no350_o16.g1 PHD_FILE: MSMg01no350_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGCTCATCAAATCTTGGAGCCCGGTATAAAGAAGGAAGGAGAANTATA
TTTCTACAAAAAAGAGGGGGGAGGGGGAATTATATAACTTNTTATCTCCC
ACCAAATAAAAGACGGCTCTAGTTGAGGTGTGTACGCGGTCGTGTGTCTN
CAGAGACCAGAGAGCAACTACAGTACGCAACAATCATGCGTTCTAAAAGC
NAACGCCTATATGATCTCCCCACGACTTGTCAGTACTCTATCTCGCGTGC
GGTGATGTGACTTTCGAGTGGGCTGTCTTCTATACAAGATTAGCTCTCAA
TACAGGACAGACAGAANGGATTCACTAGTACGCTTTGTGTTATATGCTCA
TTTGGAGGAAAGCTGCAGACATAGCACTATTATAGCTTTATTCGAGGAAG
TCGACGAGAAGATGCGCACTAGGGCACAATCAAGATGAGAAACCCGATAG
CCTTTAATTCAGATGAGACAAATATTGGTACTGTGGCGCTAGAACGTTGA
ACAAGTTATTACTTAGACACCTACGGCACGTTACAACAACCNAACTCAAT
TTTCTGCATCGCTACNTGNTCGGAAGCTTGTGAGTGCGGCCTCTCGCCTA
CTTCTGGTGCTCTTATAGGCTAGGTATTATATATGTAGAATATATACTGA
CGCGCAAGACTCGTGGCTACTACATANTTAAATTATGCGCGGAGATGAGA
TGGTCTTGTATCGTGCTGCATCGTGCTGAAGCGATGCAGATGTGCACTCC
GATGTATCTATCGGCCGTGAGCGCGTAGCGTGTACTGTGTCTTATGTGTC
TGATTATCGATTACTCTCGCGCACTCCAGACTGCTACAAGATATTACTAA
TACGGCTCTATCCACTCTCTACTTGATCACGTTACACGCCACATCGGATG
ATANATATATTCGCGCGTATAGTCGTTACTATTCTTTATGTCTGCCGACA
ACGCATATCATGCGCGATATGTGTGTTGTGCACNTGTAGTGTATATGCGT
TGCTCGTCTCGTCATGCGCTATACCCGCGATCTAACACGTTATACGAATC
TAGCATTACGCGCGCATACACCACTATATATATGTTACATCTACGATCGT
ACATACGCGCAGTCGCGTGTCTATATTNANCTGCTATCACCGACGACACG
CGCTCATACACAGATTTGTCATCACCGCTCTCACTCCGATCTGTCTACAC
CATCCTCGTCTCTGGCTGCAGCTCGCTTGTGATGCTCTTATTCACACATC
GCTCTCAGNGTGATGTATACTGAGTGCATCTGCTANTCATCCGCGCTCTC
TGCCTTTGCTATATCCCCGCTGCTCCATCTGATATCTGTAATGCCTGCGT
GCCGCCGCATCGCGCAGTGTCGTGTAACGATTTCATGCGTACTATGAGNT
CTACGCGATGCTCGCGTATCTCGTTACGTACGCATAAGAGACGCTACTCT
GATGTGTATATAGNTAGATCACGTAGCGTCGCGTACTAGTGTATACAGGC
GCCTGTGTACGGCACNACACTACCTGTATCGCCTCGCAANTGTGCACATA
TATACCTATGAATAGAAGTATATTACCATGCGGCGCACGACCGATGN
TTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCATTTACTTCTGGCTGTTTT
TTTAAATGAAGTTTTACTTCAGGTCTGTGAGATACCCAATAGGCCATTGG
AAGGTTCAGTCCCCAACATTATGCTGGTAAATACTTTTAAAGTTTTTAAA
AAACAATGATTATGATTCAAACAACAAAATTACTTGTCAGAATTATGCAA
TGCACAATTGAAGATTTTTACACCTTTTTATCCATTTTCAATTGATACCT
TCAGAAAACTGTTATTCTAAGATTGATTGTGTGTGTGTGTGTGTGTGCAA
GTGTGTGTGCGAGCATGTGTGTGTGCGATCATGTGGTGTGTTTGTGTGTG
TGTGTGTGTGTGTGTGCACATATATCACGTTCTTATACGTACATGTGGTC
ATAGTGATTCATACCATGTGCTGATTTGCTATATATATCTGTCTTTGACT
CTTTTCAGGTTCATTAACCATATCTTCCTGAAAAAAAGTAACTTTTACCA
TTTGCCTACTTCAACCCATACCACCCTCTTAATCTTGCCCTCTCCTGCGC
CTTTTGCACTAAAATATCTTACTATTTTCCCCCACTATTTCTCCTTCGCT
TTACTCCTCCATTATCTCCCTATATTGTCTTTCTCCTCTTTCTATCTTCT
CCCTCCCTTTTTATATTTTTGTATTCCCCATTCATATATTTTTCCTTTCC
GTTTCTATCATCTCGTCACCTTCTTTTCCCTCCTTCCCTCTTTATCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o16.g1 MSMg01no350_o16.g1 CHROMAT_FILE:
MSMg01no350_o16.g1 PHD_FILE: MSMg01no350_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:01 2005
         (342 letters)



>mm_chr3_12398813_12399554
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 338/340 (99%), Gaps = 2/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggccatttacttctggctgtttttttaaatgaagttttacttcaggtctgtgagatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggccatttacttctggctgtttttttaaatgaagttttacttcaggtctgtgagatacc 260

                                                                       
Query: 61  caataggccattggaaggttcagtccccaacattatgctggtaaatacttttaaagtttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caataggccattggaaggttcagtccccaacattatgctggtaaatacttttaaagtttt 320

                                                                       
Query: 121 taaaaaacaatgattatgattcaaacaacaaaattacttgtcagaattatgcaatgcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaaacaatgattatgattcaaacaacaaaattacttgtcagaattatgcaatgcaca 380

                                                                       
Query: 181 attgaagatttttacacctttttatccattttcaattgataccttcagaaaactgttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgaagatttttacacctttttatccattttcaattgataccttcagaaaactgttatt 440

                                                                       
Query: 241 ctaagattgattgtgtgtgtgtgtgtgtgtgcaagtgtgtgtgcgagcatgtgtgtgtgc 300
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 441 ctaagattgattgtgtgtgtgtgtgtgtg--caagtgtgtgtgcgagcatgtgtgtgtgc 498

                                                   
Query: 301 gatcatgtggtgtgtttgtgtgtgtgtgtgtgtgtgtgtg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gatcatgtggtgtgtttgtgtgtgtgtgtgtgtgtgtgtg 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)