NNNGGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGATCTTTCCAGACTTTTATCATAAATGGGTGTTGGAT
TTTGTCAAATGCTTTCTCCGAGTCTAATGAGATGATCATGTGGTTTTTGT
CTTTGAGTTTCTTTATATAATGGATTCCGTTGATGGATATTGAACGATCT
CTGCATCCCTGGGATGAAACCTACTTGNTCAGGATGGATGATGGTTTTGA
TGTGTTCTTGNATTCCGTTAGCGCGAACTTTATGAGNATTTTGCATCGTT
ATTCTTAGGGAAATTGGNCTTGAATTCCCAAACTTTGTTGGCCTTTTTTG
GTTTAAGGAACCATTTNNNTGGCCTTCCAANNNGGGGGAAAACTCCTTTG
GTGAAAGTCNNNNNNNNNNNNNNNNNNNNTTTNNNTNTTTNNNTACCNNN
NNNCCCCCATAACTTTTTTGNNNNNNNNNNNNTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCNNNNNNNNAATTTATATATTTGGCTNNN
NNNNGGGGNNAAAACAAAGAAAGNNTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAAAAANGGAAANNNTCNNNNNNNNNNNNNNNNN
NANANANAAAAAAAAAAATGGGGGGGGGCTGTNNNNNNANNNANNNAAAA
ANNGATTTTAATGATAGGGTTTCCCCNNNTNNNTTNNNNTNNTTTTTATT
GATTTTATTATATATATAGGT

NNNNTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTTATCAACAACTCTT
ATATACATCAAATATCTTTCTCTTCTGCTTGACTTTTCTATTCAGATTAT
CTAATATTGGTTTCTTCTTTTGTGCCCTGGATGAATTTTTTTTTTTTTTT
GACGCTAAACACTTTGGACAAGTCTCTCCCACACAAATGGACTAACTTTG
AAACTATTAATCAAGTCTTGATTTCTTCCATCTGTGAATCTTACTCTTGT
TGGTTAGTGATTGGTTTATGGAGATCAAAAGAAATGTGGAGAAGGAGGAA
TTCTATACTGAGATAAAAGTATCCTTGTATAGCCAAATCTATGAATTCTA
TTGCTAATTCTCCAATGCTGAGCGACCCTCACCATTCTCTCCAGAAGTAT
AGCTGCAAACTTGGGACTTGTGAACTCAACCTAGGTGAGGTAGTTTGTTG
ATAATAGTGTTGCTGGATGAAACTTGTCTACTAGTGTTTTTGTTTTTGTT
TTTTTAATCATTGAATACAATGTTTACAATGGAAAATTCCTTTTCCCATG
GGTTGGCTCTATGCTATTCAGTGCTACTTGCCCACTATTTAATTTTCATT
TTCCATGAATTCAATACTCAAGTTTGTTGAAGTTTTAACCCCTTCTGGTG
GCCCCAAAAATCCTAAAATTGGAGTTGAAGGAATTTTGCACTTTTTCTAT
AATTTTA

Query= MSMg01no351_b07.g1 MSMg01no351_b07.g1 CHROMAT_FILE:
MSMg01no351_b07.g1 PHD_FILE: MSMg01no351_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:15 2005
         (479 letters)



>mm_chr3_7781859_7782737
          Length = 879

 Score =  893 bits (462), Expect = 0.0
 Identities = 478/490 (97%), Gaps = 11/490 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagttatcaacaactcttatatacatcaaatatctttctcttctgcttgacttttctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tagttatcaacaactcttatatacatcaaatatctttctcttctgcttgacttttctatt 734

                                                                       
Query: 61  cagattatctaatattggtttcttcttttgtgccctggatgaa-----------tttttt 109
           |||||||||||||||||||||||||||||||||||||||||||           ||||||
Sbjct: 733 cagattatctaatattggtttcttcttttgtgccctggatgaattttttttttttttttt 674

                                                                       
Query: 110 tttttttttgacgctaaacactttggacaagtctctcccacacaaatggactaactttga 169
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttttttttgacgctaaacactttggacaagtctctcccacacaaatggactaactttga 614

                                                                       
Query: 170 aactattaatcaagtcttgatttcttccatctgtgaatcttactcttgttggttagtgat 229
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aactattaatcaagtcttgatttcttccatctgtgaatcttactcttgttggttagtgat 554

                                                                       
Query: 230 tggtttatggagatcaaaagaaatgtggagaaggaggaattctatactgagataaaagta 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tggtttatggagatcaaaagaaatgtggagaaggaggaattctatactgagataaaagta 494

                                                                       
Query: 290 tccttgtatagccaaatctatgaattctattgctaattctccaatgctgagcgaccctca 349
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tccttgtatagccaaatctatgaattctattgctaattctccaatgctgagcgaccctca 434

                                                                       
Query: 350 ccattctctccagaagtatagctgcaaacttgggacttgtgaactcaacctaggtgaggt 409
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccattctctccagaaatatagctgcaaacttgggacttgtgaactcaacctaggtgaggt 374

                                                                       
Query: 410 agtttgttgataatagtgttgctggatgaaacttgtctactagtgtttttgtttttgttt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtttgttgataatagtgttgctggatgaaacttgtctactagtgtttttgtttttgttt 314

                     
Query: 470 ttttaatcat 479
           ||||||||||
Sbjct: 313 ttttaatcat 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)