Query= MSMg01no351_d09.b1 MSMg01no351_d09.b1 CHROMAT_FILE:
MSMg01no351_d09.b1 PHD_FILE: MSMg01no351_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
(539 letters)
>mm_chr3_84203613_84204551
Length = 939
Score = 977 bits (505), Expect = 0.0
Identities = 524/531 (98%), Gaps = 3/531 (0%)
Strand = Plus / Minus
Query: 7 gaattctcttgcttgcctctgccttctttcttttgc-atacattggtttgttgaagttta 65
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 906 gaattctcttgcaagcctctgccttctttcttttgcaatacattggtttgttgaagttta 847
Query: 66 tggagccaagataacaacattgcatgtacatgcagtttagaaaatagaagaatgtttatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tggagccaagataacaacattgcatgtacatgcagtttagaaaatagaagaatgtttatt 787
Query: 126 gtccttttcagatgcatacacacagagacacatagagacacacacacacacatcttaaga 185
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 786 gtccttttcagatgcatacacacagagacacatagag--acacacacacacatcttaaga 729
Query: 186 gggacaactttattaaagggacagcactcttccaagatgagtcacaacttgcaatctgaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gggacaactttattaaagggacagcactcttccaagatgagtcacaacttgcaatctgaa 669
Query: 246 atttctagggaaacttccacgtctgctatatcaaaatccctttgcttgactctcagtctg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 atttctagggaaacttccacgtctgctatatcaaaatccctttgcttgactctcagtctg 609
Query: 306 gtggaagcactgtagcagtgtgtgactgctcagggttccttaagaaccattgctctagag 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtggaagcactgtagcagtgtgtgactgctcagggttccttaagaaccattgctctagag 549
Query: 366 tttcagttgaagaccttcaggagctgggtcaactcactgatgtgctaatatattgccaaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttcagttgaagaccttcaggagctgggtcaactcactgatgtgctaatatattgccaaa 489
Query: 426 accttttcaaaacacatcctgagcctgagccaatgagatgattggaaatagaggaacggc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 accttttcaaaacacatcctgagcctgagccaatgagatgattggaaatagaggaacggc 429
Query: 486 ccccttcggaagagtactaacaagccattggctctctgacaccgccactga 536
|||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 428 ccccttcggaagagtactaacatgccattggctctctgacatcgccactga 378
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_d09.g1 MSMg01no351_d09.g1 CHROMAT_FILE:
MSMg01no351_d09.g1 PHD_FILE: MSMg01no351_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:24 2005
(422 letters)
>mm_chr3_84066284_84067105
Length = 822
Score = 808 bits (418), Expect = 0.0
Identities = 421/422 (99%)
Strand = Plus / Plus
Query: 1 tttatcccaaaagccaccatcggagggttagctggcctcctgggggactctctagtattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcccaaaagccaccatcggagggttagctggcctcctgggggactctctagtattc 260
Query: 61 aattcatgcccagaagggtgaaattcttttgggaatcattgaggaagcttgtgaagtggg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcatgtccagaagggtgaaattcttttgggaatcattgaggaagcttgtgaagtggg 320
Query: 121 aagggatgttctgagacccctggcagggactggtattacaaggccatggcaaggtcaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagggatgttctgagacccctggcagggactggtattacaaggccatggcaaggtcaagg 380
Query: 181 tgaaactttcctgctggtgctcgttggtagatcagcctgctgacaccactgctcaggaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaactttcctgctggtgctcgttggtagatcagcctgctgacaccactgctcaggaac 440
Query: 241 tggggcctgcttcctcacaggcggctttcatttcacctgcttacatctgcccagtatcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggggcctgcttcctcacaggcggctttcatttcacctgcttacatctgcccagtatcta 500
Query: 301 aaatgtcagattaacagaaagactagtgcataaaacagctggaaagagcccctacctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgtcagattaacagaaagactagtgcataaaacagctggaaagagcccctacctttt 560
Query: 361 cttttgcctcagaggtagccagtgtttgctgtgcacacaggctgtgttcaacatcttggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttttgcctcagaggtagccagtgtttgctgtgcacacaggctgtgttcaacatcttggc 620
Query: 421 ac 422
||
Sbjct: 621 ac 622
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
