NNNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCATACCATATTTTACAGAACACTTTGAGAGAAGAGGCACT
TTGATATTGTTACACTAAACTTTGAAGATATAGTAACATGATTTAACCAA
AATATTCTGTACTTAAATTGAGAAAACATTTGTACAGTATAGATTATAAA
GATAATAAATAAGGAAAAGTTTTAGACAAAAATATGTATGCACAGATTTG
GGATGGTATTTTAGAAGATAATGAGGGGAATACTTTATCAGGTAGAATAC
ATGGCTTTGGTGATTAGAAACATACAAAAAATACAGTGATGAACTTCTCA
AACAGAATTTGAACCAGTATCTGAGACCATAAACTCTCATTTTGTTGTAT
CTATGCCAGCTGATTATTTTAAAAACTGCTCATATAAAAATAATGACATA
TTTCAAACATCTACAGAGGTGATACTATTTTCCTTAGCATTTTAGATAAC
TCTTTAATCAAAGCCATGATTTTGTCTTATTCATGTTTCCACAGAGGTAA
ACAAAGAAAACATTTGAATTTGCTAGTATATGTAGGGAACCATAGATCTT
ATTGTGTACTGGAAAGAGTTATTATATGTTGACCATTATTAAGTCTGGCA
GACTAGTAAATTGTGAAATGATATTGACTAAAACCCAGAANATAATAAAT
GAAACCCAGTANGAAATTGGTGATTAAAGTATATGATACCT

NNNNNACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTAAAATCAAGAAAAA
CAAGTTTTCTACTTCCTCAATATCTATTTAACATAATGACTGAAATTTTA
GCTACAGCAATAATCAAATTTTAGAAGATCAAGATTATTTAATACCGAAA
AGGAAGATATCAAAGAATTGTTGTTTGTAGATGATATGATAATATTAAAA
AGTATTCAGTAAATTCCACCCCACAATTCCTATAGCTGATAAATTCTTCC
AGAAGTGGTTGAACCCAAGATTAAAAAAAAAAAAGAAGTCAGTAACCCTC
CTATATAAAAATAACAAAGTAACTGACAACAAAATAAAGGAAAGAACACC
CTTCATAATAACCTCAGATAATACAAAATGTTTTGGGATAACAGAAACCA
AACAAGTGAAAGGCTTATATGATAAAACAAACAAACAAACAAACACCGAA
AGAAACAAAAACTAAAACAAAAAACTTAAAGTCTTAAATGATTTGATGGC
AGGTGATGGAAAGATCTTTAATGCTCAAAGATCAGAAGGACTAACAGTAA
AAATGACCATTCTACCAAAAGTATACAATTCTCATNAAAATTCCCATACA
GATTTTTACAGACTTGAAAAGGATATTTCTCAGCATCATATGGAAAAACA
AAAAGCCTAGGATAGCTTATACAGCCATCCCAGACTTGAAGCTGTACTAC
N

Query= MSMg01no351_f11.b1 MSMg01no351_f11.b1 CHROMAT_FILE:
MSMg01no351_f11.b1 PHD_FILE: MSMg01no351_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:34 2005
         (556 letters)



>mm_chr3_77413699_77414654
          Length = 956

 Score = 1029 bits (532), Expect = 0.0
 Identities = 547/552 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataccatattttacagaacactttgagagaagaggcactttgatattgttaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattccataccatattttacagaacactttgagagaagaggcactttgatattgttaca 697

                                                                       
Query: 65  ctaaactttgaagatatagtaacatgatttaaccaaaatattctgtacttaaattgagaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 ctaaactttgaagatatagtaacatgatttaaccaaaatattctgtacttaaattgagaa 637

                                                                       
Query: 125 aacatttgtacagtatagattataaagataataaataaggaaaagttttagacaaaaata 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aacatttgtacagtatagattgtaaagataataaataaggaaaagttttagacaaaaata 577

                                                                       
Query: 185 tgtatgcacagatttgggatggtattttagaagataatgaggggaatactttatcaggta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgtatgcacagatttgggatggtattttagaagataatgaggggaatactttatcaggta 517

                                                                       
Query: 245 gaatacatggctttggtgattagaaacatacaaaaaatacagtgatgaacttctcaaaca 304
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 516 gaatacatggctttggtgattagaaacatacaaaaaatacaatgatgaacttctcaaaca 457

                                                                       
Query: 305 gaatttgaaccagtatctgagaccataaactctcattttgttgtatctatgccagctgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaatttgaaccagtatctgagaccataaactctcattttgttgtatctatgccagctgat 397

                                                                       
Query: 365 tattttaaaaactgctcatataaaaataatgacatatttcaaacatctacagaggtgata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tattttaaaaactgctcatataaaaataatgacatatttcaaacatctacagaggtgata 337

                                                                       
Query: 425 ctattttccttagcattttagataactctttaatcaaagccatgattttgtcttattcat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 ctattttccttagcattttagataactctttaatcaaagccatgattttgtctaattcat 277

                                                                       
Query: 485 gtttccacagaggtaaacaaagaaaacatttgaatttgctagtatatgtagggaaccata 544
           |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 276 gtttccacagcggtaaacaaagaaaacatttgaatctgctagtatatgtagggaaccata 217

                       
Query: 545 gatcttattgtg 556
           ||||||||||||
Sbjct: 216 gatcttattgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)