BAC Information

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BAC

Clone NameMSMg01-351H01
Chromosome3 (Build37)
Map Location 66,324,016 - 66,501,967
singlet/doubletdoublet
Overlap genenone
Upstream gene4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351H01.T7 (MSMg01no351_h01.b1)MSMg01-351H01.TJ (MSMg01no351_h01.g1)
ACCAG462812AG462813
length779759
length of high quality
(start - end)		438 (50 - 487)500 (81 - 580)
definitionCHROMAT_FILE: MSMg01no351_h01.b1 PHD_FILE: MSMg01no351_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:41 2005CHROMAT_FILE: MSMg01no351_h01.g1 PHD_FILE: MSMg01no351_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,501,533 - 66,501,967)(66,324,016 - 66,324,515)
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTGACATCCCTGGTTCTCAGGAATACCAGCAACTCTGGG
AATGAGATTGGACTTATCTGAATGTATACATTTCTTCTTCCAAACTTCTT
TTCATAGATAAGCATGTAAAACTGTGTCTATATGTAGATGATACCAGAGA
GTGAGCTCTCTTCCTCTAATGACCTAATTCCTATGGCCTGCCATCTTCAC
TCTGGTTAGCTAAGAGGTAAGACAAGTTTTGTGTCTCTGAGGGACAGCAC
TAAAATAAAGGGTGAAGAGTATAGATAGTTTCACAGAACAGTGCTGGTAT
CCATATAAAGAAGAGGCCAGGCCAGCACCTAGACTGGAAAGTTTCATGTG
TGATTTGGGACATTATTTGCATGATTTCCTCCTAGGGTTGTTTAGCATGC
ATGTTTCTAATGGCTTTGAGCGTAGTGCCAGGTGAGAAGTTAGAGTTTTT
GATAGAAAGTATAAGTGTTGGCAGCAATTGACAGGCTCGACATATCAGTA
ACTCTTGATTTTTCTGTATATAGTTAAAACAAACCCTTTTTTACCATTGT
AATGTTTCAAAACCACTATTCTCTACATTCGTGTCTTCCATCTTTGTTCC
CTCGTATTTTATTTTTTTCAACATTTTTTCTTCTNAATATTCTTCTTAAA
TTTTTTAACACTTTATACTTGTTTTTCCGCCTTTGTTTTTTATCCTTTTT
TTTATCCTACTTCTAAAACTCTTATATTC

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATAAGGCACAGAGGCAG
CTGCAGAGGGTTGTAGGCAAGCAAGCTCCATGTGAACTGTGAGATAGGGC
CAGGCCTCAGACTCTGGCACTCTTCATGCCTCAGCAACCCAAGTACTGAG
CTTATAGGTATGAGCTGCCACATTCAGATCTTGAACTTGTTTTGAAACTA
AAACCTGCCAATTGAGAAGACTGGTTCAGAGCAGATCAATTCTCTTGTCA
AGAACAAATAGAAACAATTTAGTAGTTTTAAAACTCTTAGTTTGGACACA
TCTGAGAACTACTGACTCACTAGGAGTTGAGGGTCAATCTGCAGTCATAA
CAGAACTCATCAAGGCAAACACAATATTTTATCCTTCTTTTTCCTCAGGT
AATTCCAACCCACAGTATCGTGGGTAAAGATGCTTTGAACAGCATATGCT
TCCAGCAATCTGAACCAGACAGACGAAAATTAGACTTCAGAGCTTCCAGT
GAGGACTTGAGGTCGGATTCCAAACAAACAAAAAGGTTTAGAGAAATCAG
TAGCTAANATCCTCACCGTCATTGTTGATCGGTGAGCTGTGTAAACAGGC
AGTTTCCTTTTTATAATCAGCATAAAACCTAGTTTCCTTGGGGCATTTTA
AAACACCCTTTATTTTCCTGAACCCCCCCTTCCGGTCCCCCTGGGCCCCT
TTGAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_h01.b1 MSMg01no351_h01.b1 CHROMAT_FILE:
MSMg01no351_h01.b1 PHD_FILE: MSMg01no351_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:41 2005
         (438 letters)



>mm_chr3_66501330_66502167
          Length = 838

 Score =  779 bits (403), Expect = 0.0
 Identities = 427/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctattgacatccctggttctcaggaataccagcaactctgggaatgagattgga 63
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 638 ggaattctatggacatccctggttctcaggaataccagcaactctgggaatgagattgta 579

                                                                       
Query: 64  cttatctgaatgtatacatttcttcttccaaacttcttttcatagataagcatgtaaaac 123
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 578 cttatctgaatgtatacatttcttcttccaaacttcttttcatagttaagcatgtaaaac 519

                                                                       
Query: 124 tgtgtctatatgtagatgataccagagagtgagctctcttcctctaatgacctaattcct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgtgtctatatgtagatgataccagagagtgagctctcttcctctaatgacctaattcct 459

                                                                       
Query: 184 atggcctgccatcttcactctggttagctaagaggtaagacaagttttgtgtctctgagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atggcctgccatcttcactctggttagctaagaggtaagacaagttttgtgtctctgagg 399

                                                                       
Query: 244 gacagcactaaaataaagggtgaagagtatagatagtttcacagaacagtgctggtatcc 303
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 398 gacagcactaaaataaagggtgaagagtatagataggttcacagaacagtgctggtgtcc 339

                                                                       
Query: 304 atataaagaagaggccaggccagcacctagactggaaagtttcatgtgtgatttgggaca 363
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atataatgaagagtccaggccagcacctagactggaaagtttcatgtgtgatttgggaca 279

                                                                       
Query: 364 ttatttgcatgatttcctcctagggttgtttagcatgcatgtttctaatggctttgagcg 423
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttatttgcgtgatttcctcctagggttgtttagcatgcatgtttctaatggctttgagcg 219

                          
Query: 424 tagtgccaggtgaga 438
           |||||||||||||||
Sbjct: 218 tagtgccaggtgaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_h01.g1 MSMg01no351_h01.g1 CHROMAT_FILE:
MSMg01no351_h01.g1 PHD_FILE: MSMg01no351_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:41 2005
         (500 letters)



>mm_chr3_66323816_66324715
          Length = 900

 Score =  967 bits (500), Expect = 0.0
 Identities = 500/500 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagataaggcacagaggcagctgcagagggttgtaggcaagcaagctccatgtgaactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagataaggcacagaggcagctgcagagggttgtaggcaagcaagctccatgtgaactgt 260

                                                                       
Query: 61  gagatagggccaggcctcagactctggcactcttcatgcctcagcaacccaagtactgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatagggccaggcctcagactctggcactcttcatgcctcagcaacccaagtactgag 320

                                                                       
Query: 121 cttataggtatgagctgccacattcagatcttgaacttgttttgaaactaaaacctgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttataggtatgagctgccacattcagatcttgaacttgttttgaaactaaaacctgcca 380

                                                                       
Query: 181 attgagaagactggttcagagcagatcaattctcttgtcaagaacaaatagaaacaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgagaagactggttcagagcagatcaattctcttgtcaagaacaaatagaaacaattt 440

                                                                       
Query: 241 agtagttttaaaactcttagtttggacacatctgagaactactgactcactaggagttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagttttaaaactcttagtttggacacatctgagaactactgactcactaggagttga 500

                                                                       
Query: 301 gggtcaatctgcagtcataacagaactcatcaaggcaaacacaatattttatccttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtcaatctgcagtcataacagaactcatcaaggcaaacacaatattttatccttcttt 560

                                                                       
Query: 361 ttcctcaggtaattccaacccacagtatcgtgggtaaagatgctttgaacagcatatgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcctcaggtaattccaacccacagtatcgtgggtaaagatgctttgaacagcatatgct 620

                                                                       
Query: 421 tccagcaatctgaaccagacagacgaaaattagacttcagagcttccagtgaggacttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagcaatctgaaccagacagacgaaaattagacttcagagcttccagtgaggacttga 680

                               
Query: 481 ggtcggattccaaacaaaca 500
           ||||||||||||||||||||
Sbjct: 681 ggtcggattccaaacaaaca 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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