Query= MSMg01no351_h10.b1 MSMg01no351_h10.b1 CHROMAT_FILE:
MSMg01no351_h10.b1 PHD_FILE: MSMg01no351_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:43 2005
(609 letters)
>mm_chr3_96980426_96981434
Length = 1009
Score = 1050 bits (543), Expect = 0.0
Identities = 578/605 (95%), Gaps = 24/605 (3%)
Strand = Plus / Minus
Query: 5 gaattcaaccctatctactactccagtgtcaactttgaccaagacagcatttccccagaa 64
||||||||||||| |||||||||||||||||||||||||||
Sbjct: 586 gaattcaaccctaactactactccagtgtcaactttgacca------------------- 546
Query: 65 ggcttcttagcttgtctgtgtaacccctactagaaggagcaggtctgttcccatgttcag 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 -----cttagcttgtctgtgtaacccctactagaaggagcaggtctgttcccatgttcag 491
Query: 125 aacactgcacataatatactgtcctagcttaagacactgccctataagccaccgattact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 490 aacactgcacataatatactgtcctagcttaagacactgccctataagccaccaattact 431
Query: 185 tatgtttctctccactgaactgcaataacttgaaggtagaacctaccacctttctgataa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tatgtttctctccactgaactgcaataacttgaaggtagaacctaccacctttctgataa 371
Query: 245 ccaggacttaacagagcctgagtaacacaagaagaaaagttcttagagtcccaaagtgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccaggacttaacagagcctgagtaacacaagaagaaaagttcttagagtcccaaagtgtc 311
Query: 305 acaattccctaggctcataccaatgctttgacctttgtcatgaggctggagaagtggctc 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaattccctaggctcacaccaatgctttgacctttgtcatgaggctggagaagtggctc 251
Query: 365 agtggttaccagcactggctattgttccaggggaagtttggcttccagcatccacaaagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agtggttaccagcactggctattgttccaggggaagtttggcttccagcatccacaaagc 191
Query: 425 agctcactaccatctctaactaattcctgttccagggtatctaataccctcttctggatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agctcactaccatctctaactaattcctgttccagggtatctaataccctcttctggatt 131
Query: 485 ctgtagggcaccagtcatgtaagcagtacacagattttacacacaggcaaaacattcaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ctgtagggcaccagtcatgtaagcagtacacagattttacacacaggcaaaacattcaga 71
Query: 545 cataaaataaaaatcatgtagagacctcccccctttgatctcaacatgatgctcttttat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cataaaataaaaatcatgtagagacctcccccctttgatctcaacatgatgctcttttat 11
Query: 605 ataaa 609
|||||
Sbjct: 10 ataaa 6
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_h10.g1 MSMg01no351_h10.g1 CHROMAT_FILE:
MSMg01no351_h10.g1 PHD_FILE: MSMg01no351_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:43 2005
(495 letters)
>mm_chr3_96901808_96902702
Length = 895
Score = 845 bits (437), Expect = 0.0
Identities = 479/493 (97%), Gaps = 3/493 (0%)
Strand = Plus / Plus
Query: 1 actacatacacgagatggcctaaaactcacagagaagtatctgcacttgctaggattaag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actacatacacgagatggcctaaaactcacagagaagtatctgcacttgctaggattaaa 259
Query: 61 agtgaacatgcttggctaatttagcaacaattcttaaggaaaacgttaggcatgctaatt 120
||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 260 agtgaacatgcttggctcatttagcaacaattcttaaagaaaacgttaggcttgctaatt 319
Query: 121 aattttatgtggatgagcattttgcctgcctacatgtatgagcatcttgtgtgtgtctgg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aattttatgtggatgagaattttgcctgcctacatgtatgagcatcttgtgtgtgtctgg 379
Query: 181 tgtccaaggaagtcagaactggag-tgtgggtgcttacgaagcactaagcgggtgctgga 239
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 380 tgtccaaggaagtcagaactggagttgtgggtgcttacgaagcattaagcgggtgctgga 439
Query: 240 aactgaactcaggttgtcagcaagaacaaaaagtccccttagctgctgagcagtctctat 299
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aactgaactcaggttctcagcaagaacaaaaagtccccttagctgctgagcagtctctaa 499
Query: 300 agcccctatttaacagtcctctatgaagtcagagttaaggagagctaggggagttaggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcccctatttaacagtcctctatgaagtcagagttaaggagagctaggggagttaggat 559
Query: 360 ttttaaatccttcaagtttaatattctcattttacataggaacaatatgaaaggaagttg 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 560 ttttaaatccttcaagtttaatattctcattttacaaaggaacaatatgaaaggaagttg 619
Query: 420 attggtcccaggttttactgccacttagaagcagaagtcactgggagtggg-caggggaa 478
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct: 620 attggtcccaggttttactgccacttagaagcagaagtcactgggag-gggtcagaggaa 678
Query: 479 tctaggtttaaat 491
||||||||||||
Sbjct: 679 actaggtttaaat 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
