BAC Information

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BAC

Clone NameMSMg01-351J04
Chromosome3 (Build37)
Map Location 100,401,368 - 100,401,970
singlet/doubletsinglet
Overlap geneMan1a2
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026
Downstream geneVtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351J04.T7 (MSMg01no351_j04.b1)MSMg01-351J04.TJ (MSMg01no351_j04.g1)
ACCAG462911AG462912
length746929
length of high quality
(start - end)
607 (53 - 659)---
definitionCHROMAT_FILE: MSMg01no351_j04.b1 PHD_FILE: MSMg01no351_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:51 2005CHROMAT_FILE: MSMg01no351_j04.g1 PHD_FILE: MSMg01no351_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTATTGTGGCTCACAGCTTTGGAAGTTTGGGTTAATT
ATAATGGGGAAATCGTGGAGGGACAGAGCTGTTCTTATCTTGGCAGACAG
GAAGCCAAGAAAGGGGAATACAGGCATGGTACACCTACAAACAGTACACA
ACGCAATGCCTCTGGTTACCTTCTTCCTTCAGTTAGCACTCCACTTCCTA
TCACGTTCTAGTAACTCTGTTGTAGTCACCATATCTTTCCCTTTCTTCTG
CTACACCCCAATGACCAATGCTCAAAATGAATTTGAAAGTACAGATGAAA
CTGGGAGTGTGGCTCCGTGATAGAAAACACTTGCCTAGTAGAAAGTTTGA
ACCCTGATTGCATCCCAAGTATATTTAGAAAAATCTCCTTCACAGATTCA
TTTGGTTTTACCTCTTTTTCTAATTGAGGAAAGGACACCGTCCATTATAT
TGATCCTTTGACCTGTGTTCCAGATAACATGTTCTTCCAGTTCTTGAATT
TTATTTTCCATTTCCTCTAATTTAATATGAAACTTTGAACTTTCCAGTTA
CATTTTTATAGCAGTAAAGTCCTGGCTTTTTGTACTTTTTCAGTGACCTA
TACCACCATGACACCAAAAGTAATTTCTTATGTGACTTTTAGCTCCCACA
GACCACATATTAGTTGTCTACTGCTAAGTAACACATAACTCTAAAA
CCCCTACACAACAACTTATTCGATTTTAATGTATACCACTGGACAAACTC
CTGGTCTTCCGACGTTTAGGTTGACCGTGATACAAGGATCCGTGGGCAAT
TCATGCATATAGAATAGTGAGTCATCCATCTAGACACATTTTCTGTGACA
AGTGAACCTGTAGTGTGAAAAAAAATATAGTGTTACCTCTCTTGGGCGAT
TTTTCTTTCGTTTAGATATAAAGATCCTCATCCATGTTAGATGTTATGTT
CCCCTAACACCCAGGTTTTGGCTTTCTGAACTTCTCTTGAAGAACCCCCC
CTTACTTTCTGCCCTCTTGCCTTCCGGCTTCCGCCCTTCCCAAGGAATCT
TGGTAATTAAACTATTTTGGTGTTTACCCTCTCCCCACATATTGCTTTGC
TTTCCTCCGAATTGGCCCACAGGATTTACCCTAAGACAATACTAGTTGTA
CTTCTCTGGGGAATTTCTTAAACAATGGTCTTCTTTATTTGCATAAATTA
GACACATATTCCCATATTTTGAAAAACGAGGTCAATAAAAAAAAAAATCC
TTTAACACATCCCAATGTCCCCAACTATCCTATATTTTGCCGCAATATTG
TAAAAATTTTTCTTTTTAATTTTTAAACAAACTCTACTTTTTTTTATCTC
TTCTCTTTTATCTTACGCGATATTACTTTCCCCTCCCACCTCGCGAAATT
AAATAATCTTCCCCCATCTTACCTCACTATTCTTCCCAACTTTTCCACTT
TTACACCCCCCCTTTTTTCACTTATTCTNATCAAAATTCACCATTTTTTA
CCCACACCTTTATACAAACCACTTTTCTATATTCTTAACATACTTTATCT
TCTTCTCACCATGTGACACTTTTGCTTTAACCATTATTCTTTTTTCTCTC
CTTTTTTATACTCACACCACATTTTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_j04.b1 MSMg01no351_j04.b1 CHROMAT_FILE:
MSMg01no351_j04.b1 PHD_FILE: MSMg01no351_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:51 2005
         (607 letters)



>mm_chr3_100401164_100402170
          Length = 1007

 Score = 1127 bits (583), Expect = 0.0
 Identities = 598/603 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttattgtggctcacagctttggaagtttgggttaattataatggggaaatcgt 64
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 807 gaattctttattgtggctcacagctttggaagtttgagttaattataatggggaaatcgt 748

                                                                       
Query: 65  ggagggacagagctgttcttatcttggcagacaggaagccaagaaaggggaatacaggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ggagggacagagctgttcttatcttggcagacaggaagccaagaaaggggaatacaggca 688

                                                                       
Query: 125 tggtacacctacaaacagtacacaacgcaatgcctctggttaccttcttccttcagttag 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tggtacacctacaaacagaacacaacgcaatgcctctggttaccttcttccttcagttag 628

                                                                       
Query: 185 cactccacttcctatcacgttctagtaactctgttgtagtcaccatatctttccctttct 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cactccactttctatcacgttctagtaactctgttgtagtcaccatatctttccctttct 568

                                                                       
Query: 245 tctgctacaccccaatgaccaatgctcaaaatgaatttgaaagtacagatgaaactggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctgctacaccccaatgaccaatgctcaaaatgaatttgaaagtacagatgaaactggga 508

                                                                       
Query: 305 gtgtggctccgtgatagaaaacacttgcctagtagaaagtttgaaccctgattgcatccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgtggctccgtgatagaaaacacttgcctagtagaaagtttgaaccctgattgcatccc 448

                                                                       
Query: 365 aagtatatttagaaaaatctccttcacagattcatttggttttacctctttttctaattg 424
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 447 aagtatatttagaaaaatctccttcactgattcatttggttttacctctttttctaattg 388

                                                                       
Query: 425 aggaaaggacaccgtccattatattgatcctttgacctgtgttccagataacatgttctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggaaaggacaccgtccattatattgatcctttgacctgtgttccagataacatgttctt 328

                                                                       
Query: 485 ccagttcttgaattttattttccatttcctctaatttaatatgaaactttgaactttcca 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 327 ccagttcttgaattttattttccatttcctctaatttaatatgaaactttgaactttcta 268

                                                                       
Query: 545 gttacatttttatagcagtaaagtcctggctttttgtactttttcagtgacctataccac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gttacatttttatagcagtaaagtcctggctttttgtactttttcagtgacctataccac 208

              
Query: 605 cat 607
           |||
Sbjct: 207 cat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space:   595209
Effective search space used:   595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)