BAC Information

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BAC

Clone NameMSMg01-351K12
Chromosome3 (Build37)
Map Location 83,515,047 - 83,515,290
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
Downstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351K12.T7 (MSMg01no351_k12.b1)MSMg01-351K12.TJ (MSMg01no351_k12.g1)
ACCAG462975AG462976
length760729
length of high quality
(start - end)
434 (54 - 487)244 (83 - 326)
definitionCHROMAT_FILE: MSMg01no351_k12.b1 PHD_FILE: MSMg01no351_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:57 2005CHROMAT_FILE: MSMg01no351_k12.g1 PHD_FILE: MSMg01no351_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCATCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTAAGGTAGCCACCTATTCAGTAACTAATTAAGCAT
TACAAAAGATAGAGCCAACAGCTCAGGGCTGGTCTGCAGACTGTTTATTA
GGACAGTAAGGACAGTCTTAACCAAATAAGGGTTTACCATGAGAAAAGTT
GGGGAATCCTACTGAGACAGGTTTCTTCACTAGGCCCAAAGAAATCAGGC
ATAACTATAGAGCATAAATAAATTTTATGCCTCAGTCCAGCCTTTCTTTT
TTATATTAATAACAGGGAGGAGATGTAGCCTCCCATAAGACTGAAGCAGG
CTGAGCCAGGCTTGACTTTGTTGCTACTAAGGAGATCACCTGGGGTGGAG
CCTGCCTCCCTGGATCACTCTATTGTTCTGCCACTGCCACTGCCACTGCT
GAGATCTGCTGCCTAGCTGTTCCGGAGCCTACACATGGTCACCTGCAGCT
GGTCTCCAAGGATGATTTGGCAGGAATGGGCTTTCCCCTCTCTTTTATTA
AGCATGTCCGCCCTTAAAAATTTGAACCTTGACCAAACTAAGTTGTCTTG
GTTCCAATTATTTCTTCAACCCTCCTCTATACCCCCTTCTTTTTCTTCCC
AGATTTCATAGAAAGCCTTCCCCAGGTCTTTGACCCCCTGATTATGGATA
ATTCCTGCCATGGCTCGCTCTCTTTATTATCCCTCCCCCTTTATGGTTAC
TGCTCATTCG
TTTTTCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATCTGAGTGCTGTTT
ATTGCTTTAACCCACACATGTTATTTCTGGAGATGGTGTGGCTCACGGAG
AGACGTCTGGGGCAGCCCGATCACACTCCTTCAGGGGCCCCTCTGCCTTT
TTTGGTCTACAGAGTTCTGAATTGCACTTTTGACCTCCTCCTGAACAGCT
TGCAAGGCACAATTGAGCTGAACCAGGACCCCCCAGTTGCTGCTCTGAAT
GTACGGTCTGTGGCCTGACTTTCCATGTCTTTGTAGTGTTCGCTGGTTTG
AATGAGGTGCAGAGACTTACATGAAGGGAACTTCATAAACAAACGTTCAG
AAAGAGGACCCTTACACTTGCAGGTGACAGGGACCTCTACAGAACCCATC
CGCATTCTCCACAGTGAGCATGTATATTATCAATCACAAAAGAAGAACCG
GGTAGACTTGATAAGATCCCTGCAGGACCTGGGGGGACTAGCGAAACTCG
CGACGCGCGAATGTGACTCGAATGTGTTGTGTACTTGTTTGAAAATGTCT
AACACATCGCCTCTAGTCAGGATCCCTAGGGGACTTATTTCAACGGAGAT
GGATCCTCCTCGAAGGGACTTCCGTTCGGTCGCGAAGCGACCCCCCAAGA
ACTGCCAAACCCTTCCTTGTCTTATCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_k12.g1 MSMg01no351_k12.g1 CHROMAT_FILE:
MSMg01no351_k12.g1 PHD_FILE: MSMg01no351_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:57 2005
         (244 letters)



>mm_chr3_83514847_83515490
          Length = 644

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%), Gaps = 2/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatctgagtgctgtttattgctttaacccacacatgttatttctggagatggtgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagatctgagtgctgtttattgctttaacccacacatgttatttctggagatggtgtggc 260

                                                                       
Query: 61  tcacggagagacgtctggggcagcccgatcacactccttcaggggcccctctgccttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacggagagacgtctggggcagcccgatcacactccttcaggggcccctctgccttttt 320

                                                                       
Query: 121 tggtctacagagttctgaattgcacttttgacctcctcctgaacagcttgcaaggcacaa 180
           ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggct-cagagctctgaattgcacttttgacctcctcctgaacagcttgcaaggcacaa 379

                                                                       
Query: 181 ttgagctgaaccaggacccccc-agttgctgctctgaatgtacggtctgtggcctgactt 239
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgagctgaagcaggacccccccagttgctgctctgaatgtacggtctgtggcctgactt 439

                
Query: 240 tccat 244
           |||||
Sbjct: 440 tccat 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)