BAC Information

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BAC

Clone NameMSMg01-351K18
Chromosome3 (Build37)
Map Location 51,622,231 - 51,622,640
singlet/doubletsinglet
Overlap geneMaml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351K18.T7 (MSMg01no351_k18.b1)MSMg01-351K18.TJ (MSMg01no351_k18.g1)
ACCAG462987AG462988
length834767
length of high quality
(start - end)		54 (77 - 130)421 (85 - 505)
definitionCHROMAT_FILE: MSMg01no351_k18.b1 PHD_FILE: MSMg01no351_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:58 2005CHROMAT_FILE: MSMg01no351_k18.g1 PHD_FILE: MSMg01no351_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTGCTTCTATTGTTAAGATGCATGTCGGGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCCAAACACGAAGCTAAAAC
CTACATACTACTTCCTCTCCTTTCGCACGGTCTATAATTTTGTACGTTGT
ATTTCTTATCTCACTTTCTATGTTTGTTATAATTTTTTTATTCCTTTTAT
CTTTCTCTTTTTTTTCTTAACTAGTGCCATCCCTCATCTTTCACCATCAC
ACTACCCACCTTCCTCTCAAACCATTTATTTTTCTCCCCCCTCCCCCCCT
TTTACCACTAACCCACAATATTTTCTCTTCCCCATTCTTTCCTCCCTATC
CCCACAACCATATCAACTCTATTTCTCCCCCCCCCCCTTATTACCCTCTT
CTCATCCCATACTCTACATACCCCATTTTCACCTCCTACCCTCCTCTCTC
TTCTTACTCCCTAACTACATTAACCTACCACTACACTTCCCACCCCTCCA
TTCACCCCACTTACTTCTCACTTCTCCCCCTCCCCTTCATTTCATTAACC
ACATATACTTCCTCATTCATATACCCCTACTCCTCCTCCACTACATTCCC
ATATTCCATATCTCATACACTCACCCCACTTTCCCCTCCTCACTTTTCCT
TCCACTTATCCCCTTCCCTTAACTATTTTCCCTCTATATATACACTCTTC
CTTCTCCTTTCTTCTCTCAACCATGTATACACTTCCATAACTCTCTGTAT
ATATCCACCACACCAACTCCCAATCAACTCCAAG

NNNNTTTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAAAAGCTCATTG
TCCTCTCTTAAAGAAAAATGCAAACCTCCCTTGTAGCCTATCTCAGAGCT
AAAACTTAGATACAACTTCCTCTCCTTTCGTACTAACTATAAATTGTGAG
GATGTATTTCTCAGGGATCTTTTTAATTGGGTCAGAATTTGATTATTTCT
GTGATTTTTTTTTTTTTTTGCTTAGCTTGGGTTGTTGTTGTTTTTTTTTA
ATGAACTTTTTTATCTTCTTACGAACGATGTGTTGTTTAGTAGAGGATTT
TTTTTTAATTCAGACATGCAAACATACATATATTTAAATCACTGAAAGTC
ACAGAACTCCAAAATAGCCACTGCCAGGATTGCTGGGTGCTGCTAGATGC
TTTTTTTTCAGTCCTTAAAGAGCCATTTGGGGGATGGATTCTTTCCATTT
CTTCATTTTTGGACGNATAGATGCATAGATCTCACACACTAATGCCGCTT
GCAGCTATATGAGAGAATAATTTTTTTAATGGCTGGGAAGTTTAGCCGGG
AAAAAAAAATACCTGACTATGCCGCTCCTGGCCTCGGTTCTAAAGGAGCC
CCGGGTGAGAAAAAGACCGCCTAAAACGTTTTTTTCCTGGGGGCACACCA
AAAAGCCCTCTCCCCCTGGAAATTTTAAAATTCACCACTCTTTTTGGCCT
GGGCTAGAGTCTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_k18.g1 MSMg01no351_k18.g1 CHROMAT_FILE:
MSMg01no351_k18.g1 PHD_FILE: MSMg01no351_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:59 2005
         (421 letters)



>mm_chr3_51622031_51622840
          Length = 810

 Score =  712 bits (368), Expect = 0.0
 Identities = 405/422 (95%), Gaps = 13/422 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcaaaagctcattgtcctctcttaaagaaaaatgcaaacctcccttgtagcctatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cttcaaaagctcattgtcctctcttaaagaaaaatgcaaacctcccttgtagcctatctc 551

                                                                       
Query: 61  agagctaaaacttagatacaacttcctctcctttcgtactaactataaattgtgaggatg 120
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 550 agagctaaaacttagatgcaacttcctctcctttcttactaactataaattgtgaggatg 491

                                                                       
Query: 121 tatttctcagggatctttttaattgggtcagaatttgattatttctgtgatttttttttt 180
           |||||||||||||||||||||||||||||||||||||||| |||        ||||||||
Sbjct: 490 tatttctcagggatctttttaattgggtcagaatttgatt-ttt--------tttttttt 440

                                                                       
Query: 181 tttttgcttagcttgggttgttgttgtt-tttttttaatgaacttttttatcttcttacg 239
           ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct: 439 tttttgcttagcttgggtt-ttgtt-ttgtttttttaatgaacttttttatcttcttacg 382

                                                                       
Query: 240 aacgatgtgttgtttagtagaggatttttttttaattcagacatgcaaacatacatatat 299
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||
Sbjct: 381 aacgatgtgttgtttagtagaggattttttta-aattcagacatgcaaacatacaaatat 323

                                                                       
Query: 300 ttaaatcactgaaagtcacagaactccaaaatagccactgccaggattgctgggtgctgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttaaatcactgaaagtcacagaactccaaaatagccactgccaggattgctgggtgctgc 263

                                                                       
Query: 360 tagatgcttttttttcagtccttaaagagccatttgggggatggattctttccatttctt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagatgcttttttttcagtccttaaagagccatttgggggatggattctttccatttctt 203

             
Query: 420 ca 421
           ||
Sbjct: 202 ca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 810
Length adjustment: 9
Effective length of query: 412
Effective length of database: 801
Effective search space:   330012
Effective search space used:   330012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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