BAC Information

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BAC

Clone NameMSMg01-351O23
Chromosome3 (Build37)
Map Location 33,638,809 - 33,752,697
singlet/doubletdoublet
Overlap geneTtc14, Ccdc39
Upstream geneNdufb5, Usp13, Pex2, EG545512, LOC100041058
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351O23.T7 (MSMg01no351_o23.b1)MSMg01-351O23.TJ (MSMg01no351_o23.g1)
ACCAG463186AG463187
length743753
length of high quality
(start - end)		450 (60 - 509)434 (87 - 520)
definitionCHROMAT_FILE: MSMg01no351_o23.b1 PHD_FILE: MSMg01no351_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:18 2005CHROMAT_FILE: MSMg01no351_o23.g1 PHD_FILE: MSMg01no351_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,752,252 - 33,752,697)(33,638,809 - 33,639,242)
sequence
TGTTCNNNNNNNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCATAATGAACATTTTTAGATGTGGTTAGTTTA
ATCACTGGTTTGTGTTTACAAAATTTTATATGGTTGCAAAGTTGAAATAT
ATGTAATCTCTGTAGAAGATTGATTTATAAGTTGATTTACATGTTGTGTT
ATTAAGCTTACATTTTGTTTATAATTATTACCTTGACTGTGGCTGCTTTA
TGGCAATGTCAGCTGTGACATTTGGAAAAGTAAGAGGGATTGGACTATGC
TTTCTGCACTCAGGTATTTGTAATGTGGAGTCAAAGAGAAGATGATAGCA
GGCTGCTGGGTTACTATTTGATCCACAGTTATTTGGGGGAGGGACTTTTC
AAATTCACCTCCAATGTTGCATCCAGATGTGTTGGCCCAGATGTTGGGAC
TAATGGTCTTCATTGTACCAGCAGACTTTCATGAAACTTTGGAGCGGACA
ACACCAAGAAAAAGATAANAGGGGAAAAGGCATCTGTGGTGCCTTACATA
TACAGATATGTAGCACCATCTGCTGGATTCCAGCAAAGTGAGACCAGCAG
AACACACATTTTCCACCAGCAGTGAACTGCTGAGTAGGGCAGACTCCCAG
AGGATTGGCTTACTCACACCTCCGATTCTAATTTTATGAATGGTGGGAAA
AACTTTATAATAACCAATTCTTTCTTCCCTGGTGTTTAGAAAA

CCGGGGNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCCCAAAGGCA
TTTCTATAGCTGATGTATTCATATCAGTCATGTTTCAGTAAATATCTCTT
CCACAAAAAGCAATTTTGACTACCTTCCCTAAAATAATTCAACCTTTCGT
TCATGTGCCCAAGCTCTCTAACTCTTTTTTTCTTCTTAGCACTTGCCATT
ATCCAAAATCGGATTAATAATTCATTTGATAATAACCTTAAGGTCAGAGA
TGATGGTGCTTCCTTAACTACTTTATCTTCAGTGCCTGGGCATGCCAGCT
ATAATGGAAAATGCTCAATAAATATTAAGCAAATGAATTAATTCCTCTGT
GCCCCATCACTTTCTGATGTTATGATACTCAAAGGGTCAGTGGAGGAGAT
TTACATGGTGACCCTGTCAGATTCTGAATGGACTTATAACCCACCTCTCA
TTTATTTTCAGGCAACCTGCCCGTAATAGCACCTTGCTTTCTAACTAGAG
GCAGAACTCAACTCTTCCTCCTTCCTTCCAATGATGGNCTGAGATATTTT
CACTGATTTCCTTTTCTATCAAGATACACATGGTTTCTTCATGTCTCATT
ACCTACCTTTCTTCCATAAGGGAATATTTAGCATTTCTGAAAAGAACTTC
CTGGGAACTTGAAAATGAAATCCGGAGGGTTGGTGGCCAAAAAAAACTGG
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_o23.b1 MSMg01no351_o23.b1 CHROMAT_FILE:
MSMg01no351_o23.b1 PHD_FILE: MSMg01no351_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:18 2005
         (450 letters)



>mm_chr3_33752048_33752897
          Length = 850

 Score =  832 bits (430), Expect = 0.0
 Identities = 442/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataatgaacatttttagatgtggttagtttaatcactggtttgtgtttacaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattcataatgaacatttttagatgtggttagtttaatcactggtttgtgtttacaaaa 591

                                                                       
Query: 65  ttttatatggttgcaaagttgaaatatatgtaatctctgtagaagattgatttataagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttttatatggttgcaaagttgaaatatatgtaatctctgtagaagattgatttataagtt 531

                                                                       
Query: 125 gatttacatgttgtgttattaagcttacattttgtttataattattaccttgactgtggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gatttacatgttgtgttattaagcttacattttgtttataattattaccttgactgtggc 471

                                                                       
Query: 185 tgctttatggcaatgtcagctgtgacatttggaaaagtaagagggattggactatgcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 470 tgctttatggcaatgtcagctgtgacatttggaaaagtaagagggattggactatgcttc 411

                                                                       
Query: 245 ctgcactcaggtatttgtaatgtggagtcaaagagaagatgatagcaggctgctgggtta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ctgcactcaggtatttgtaatgtggagtcaaagagaagatgatagcaggctgctgggtta 351

                                                                       
Query: 305 ctatttgatccacagttatttgggggagggacttttcaaattcacctccaatgttgcatc 364
           ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 350 ctatttgatccacagttatttgggggagggacttttcaagttcatctccaatgttgcatc 291

                                                                       
Query: 365 cagatgtgttggcccagatgttgggactaatggtcttcattgtaccagcagactttcatg 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 290 cagatgtgttggcccagatgttgggactaatggtcttcattgtactagcagactttcatg 231

                                     
Query: 425 aaactttggagcggacaacaccaaga 450
           ||||||||||||||||||||||||||
Sbjct: 230 aaactttggagcggacaacaccaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no351_o23.g1 MSMg01no351_o23.g1 CHROMAT_FILE:
MSMg01no351_o23.g1 PHD_FILE: MSMg01no351_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:18 2005
         (434 letters)



>mm_chr3_33638609_33639442
          Length = 834

 Score =  824 bits (426), Expect = 0.0
 Identities = 432/434 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctcccaaaggcatttctatagctgatgtattcatatcagtcatgtttcagtaaatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctcccaaaggcatttctatagctgatgtattcatatcagtcatgtttcagtaaatatc 260

                                                                       
Query: 61  tcttccacaaaaagcaattttgactaccttccctaaaataattcaacctttcgttcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttccacaaaaagcaattttgactaccttccctaaaataattcaacctttcgttcatgt 320

                                                                       
Query: 121 gcccaagctctctaactctttttttcttcttagcacttgccattatccaaaatcggatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaagctctctaactctttttttcttcttagcacttgccattatccaaaatcggatta 380

                                                                       
Query: 181 ataattcatttgataataaccttaaggtcagagatgatggtgcttccttaactactttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataattcatttgataataaccttaaggtcagagatgatggtgcttccttaactactttat 440

                                                                       
Query: 241 cttcagtgcctgggcatgccagctataatggaaaatgctcaataaatattaagcaaatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcagtgcctgggcatgccagctataatggaaaatgctcaataaatattaagcaaatga 500

                                                                       
Query: 301 attaattcctctgtgccccatcactttctgatgttatgatactcaaagggtcagtggagg 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 attaattcctctgtgccccatcactttctgatgttatgatactcaaagggtccgtggagg 560

                                                                       
Query: 361 agatttacatggtgaccctgtcagattctgaatggacttataacccacctctcatttatt 420
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 agatttacatggtgaccctgtcagaatctgaatggacttataacccacctctcatttatt 620

                         
Query: 421 ttcaggcaacctgc 434
           ||||||||||||||
Sbjct: 621 ttcaggcaacctgc 634


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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