BAC Information

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BAC

Clone NameMSMg01-351P22
Chromosome3 (Build37)
Map Location 135,762,136 - 135,762,710
singlet/doubletsinglet
Overlap geneBank1
Upstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923
Downstream geneLOC100039477, LOC668868, Ppp3ca, LOC668870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351P22.T7 (MSMg01no351_p22.b1)MSMg01-351P22.TJ (MSMg01no351_p22.g1)
ACCAG463232AG463233
length744755
length of high quality
(start - end)
637 (52 - 688)575 (83 - 657)
definitionCHROMAT_FILE: MSMg01no351_p22.b1 PHD_FILE: MSMg01no351_p22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005CHROMAT_FILE: MSMg01no351_p22.g1 PHD_FILE: MSMg01no351_p22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTGTTTAGCTCTGTACCCCATTTTTATTAGGGTTATTT
GGTTCTCTGGAGTCTAACTTTTTGAGTTCTTTGTTTATATTGGATATTAG
TCCTCTATCAGATGTAGAGTTGGTAAAGATCTTTTCCCAACCTGTTGGTT
CCTGTTTTGTCCTATTGACAGTGTCCTTTGCCTTTCAGAAGCTTTGCAAT
TTTATGAGGTCCCATTTGTCAATTTTTGATCTTACAGCACAAGCCATTGC
TGTTTTGTTCAGGAATCTTTCCCCTGTATCCATATCTTTGAGGCTCTTCA
TCACTTTCTCCTCTATTAGTTTCAGTATCTCTGGTTTTATGTGTAGTTCT
TTGATCAACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAAT
TAGCATTCTTCTACATGCTAACCACCAGTTGAGCTAGCACCATTTGTTAA
AGATGCTATCTTATTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAGATC
AAGTGACCATAGGTATGTGGGTTCATTTCTGGGTCTTCAGTTTTGTTCCA
CTGATCTACCTGTCTGTCGCTGTACCAGTACCATGCAGTTTTTATCACAA
TTGCTCTGTAGTACAGCTTGAGGACAGGCATAGTGATTCCACCAGAGGTT
CTTTTATTGTTGAGAATAGTTTTTGCTATCTTACGATTTTTATT
TTTTTTCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGACCAGTCTGCTGCC
AACCTGTTTTCTTCTCCTACAGAGTTTTATGTACCAACTGCACTGTTATC
TCTCAAGGGTCCACTGAAGCTTGACACATAATAGGTGAGCAATGAATGTA
GGTTGAATGGTCAAAAAAGTGTCTCCCAGTCTTTGGTTTTCTGACATAGT
GTGGCACCTTAGTGTAGATTATGGTGATCAACATGAGCCTTCCCAGAGAT
GGCGCCTTAGAGGTCATAATGCTAAATTTTATGATTTCAAACATTCACTT
GAAGAAATATTTCATTTCATGTATATAAGTATTTGCTTGCACGTATGCAT
GTGTACTAAGTATATGCAAGGCCCAAAGAAGCCAGAAGAAGGGACAGATC
TCTTGGAACAGTCAAAGACCATTGTGAGCCACCACATGGTTTCTGGAAAC
AGAATCCAGGTCCTCTGCAAGAGCAGCAAGTGCTGTTTACTGCTGAGCCA
TCTCTCCAGCCCCTTCATATCCCACCCTTTAAAGCCAATTTATACATCTG
ATAGTCTTTTACGATCTGATGACTAAAATGTATTATTTATGACCTATGAT
GAATAGTGCCATTTTAGTCTTTGTTATGAAACTTTCATTGTAAGACCAGT
TTATAACTTGGAGAGGTAAGCCCCGACTAGATGATTAAGTAAGGGATGAC
AGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_p22.g1 MSMg01no351_p22.g1 CHROMAT_FILE:
MSMg01no351_p22.g1 PHD_FILE: MSMg01no351_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:22 2005
         (575 letters)



>mm_chr3_135761936_135762910
          Length = 975

 Score = 1044 bits (540), Expect = 0.0
 Identities = 567/576 (98%), Gaps = 2/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgaccagtctgctgccaacctgttttcttctcctacagagttttatgtaccaactgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaccagtctgctgccaacctgttttcttctcctacagagttttatgtaccaactgca 260

                                                                       
Query: 61  ctgttatctctcaagggtccactgaagcttgacacataataggtgagcaatgaatgtagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 ctgttatctctcaagggtccactgaagcttgacacataataggtgagcaatgaatgcagg 320

                                                                       
Query: 121 ttgaatggtcaaaaaagtgtctcccagtctttggttttctgacatagtgtggcaccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaatggtcaaaaaagtgtctcccagtctttggttttctgacatagtgtggcaccttag 380

                                                                       
Query: 181 tgtagattatggtgatcaacatgagccttcccagagatggcgccttagaggtcataatgc 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tgtagattatggtgatcaacatgagccttcccagaggtggcgccttagaggtcataatgc 440

                                                                       
Query: 241 taaattttatgatttcaaacattcacttgaagaaatatttcatttcatgtatataagtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaattttatgatttcaaacattcacttgaagaaatatttcatttcatgtatataagtat 500

                                                                       
Query: 301 ttgcttgcacgtatgcatgtgtactaagtatatgcaaggcccaaagaagccagaag-aag 359
           |||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||| |||
Sbjct: 501 ttgcttgcacgtatacatgtgtactaagtgtatgcaaggtccaaagaagcca-aaggaag 559

                                                                       
Query: 360 ggacagatctcttggaacagtcaaagaccattgtgagccaccacatggtttctggaaaca 419
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 ggacagatctcttggaacagtcaaagactattgtgagccaccacatggtttctggaaaca 619

                                                                       
Query: 420 gaatccaggtcctctgcaagagcagcaagtgctgtttactgctgagccatctctccagcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaatccaggtcctctgcaagagcagcaagtgctgtttactgctgagccatctctccagcc 679

                                                                       
Query: 480 ccttcatatcccaccctttaaagccaatttatacatctgatagtcttttacgatctgatg 539
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccttcatatcccaccctttaaaaccaatttatacatctgatagtcttttacgatctgatg 739

                                               
Query: 540 actaaaatgtattatttatgacctatgatgaatagt 575
           ||||||||||||||||||||||||||||||||||||
Sbjct: 740 actaaaatgtattatttatgacctatgatgaatagt 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)