BAC Information

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BAC

Clone NameMSMg01-352J21
Chromosome3 (Build37)
Map Location 20,294,632 - 20,295,014
singlet/doubletsinglet
Overlap genenone
Upstream geneDnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352J21.T7 (MSMg01no352_j21.b1)MSMg01-352J21.TJ (MSMg01no352_j21.g1)
ACCAG463699AG463700
length758769
length of high quality
(start - end)		527 (72 - 598)383 (78 - 460)
definitionCHROMAT_FILE: MSMg01no352_j21.b1 PHD_FILE: MSMg01no352_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:14 2005CHROMAT_FILE: MSMg01no352_j21.g1 PHD_FILE: MSMg01no352_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAAGAAGTTCCAAGAAAATAGAAGGATCTCCCATGCTCATGGA
TCAGTAGGATTAACATAATAAACATGACTAATTTACCAAAAGCATTCAAT
TAATCCCTACTAAAATTCCAACTCATTTCTTCACAGAGTTACAAAGAGCA
ATTCTCAACTCTATATGGAATAACAAAAGATCCAGGATAGTGAAAACAAT
TTTCAACAGTAAAAGAACTTCTGGGGGATTCACCATCCCTGACCTTAAGC
TGTACTACAGAGTAATAGTGATAAAAACAGCATGGTATTGGTACAGAGAC
AGACAGGTAGATCAATAGAATATAATTGAAGACCAAGAAATGAACCCATA
TACCTATGGTCACTTGATCGTTGACAAAGAAGCTAAAACCATACAGTGGA
AAAAAAGAAAGCATCTTCAACAAATGGTGTTGTTTCAACTGGAGGTCAGC
ATGTAGAAAAATGCAAATGGATCCATTCTTATCTCCTTGTACAAAGCCTA
AGTCCAAGTTGATCAAGGACTTCCACATAAAACCAGATACACTGAGTCTA
ATAGAAGAGAAAGTGGGAAATAGCCCCAAACACATTGCCACAGTGAAAAA
TTTCCTGACAGAACACCAATGGCTCAAGCTCTAAGATAACAGGCGATAAG
TGGACCCTCATGAAACTGAAAAGTTTCTTTTAGGTTAAGAAACTTATCCA
TAGGACAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAAGTCAGAATCCTGGAAGCC
TCTCAAAATTCTTCTTGTGTACTTTCACATATACTCTGGAAAAATCTTAG
CATTTTATTCAATGAATACATTAATGCAATATTGCTAGTTTATGCCATCA
GTTTCATCTAATTATTAAAAAGAGCTACCTAGTGTGACCGATTGCCTTTC
TACTGTTGTAGTCATCTTTCTATAATTTACTGATGAAAATTATTTTTAAA
TCCACTTTCATCAAGCTATATTTAAGATAAAATCACAATGTTCCTGGATA
AGACATTTTGATATTCATTCCTTGGGAAGACAAATACTTGCTCTCTCCCT
ATTCCTTATTTTCCTATATTTCTTTGTTGGGAGGGAACTCCATTAGATTT
CCCTTTAGACATTAGAATGTATAATGATATTGTTTGTTTAGGTACCTATA
TTTTTGATGTTTCACAGACNAAGCTTCTTTGTTATATTAAAAGAACAAAA
TCTCCGTAAACTTTTTAATCCCCCTTTCTCTCCTCTCCTTCCCGGTTTTT
TGGCTGAGCCCTAAATCTAACAATACCCCCCACAAATTCATAACTTTTCG
AAAAATCCTAATTTTTCTGGACCTCATTTGCATGGGGCCCCTATTTACCC
CCCTGTATATCGCATCCTTACCTTCCCCTCACCCCCATACCCCTTCTTTT
TTCCCTTCCTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_j21.g1 MSMg01no352_j21.g1 CHROMAT_FILE:
MSMg01no352_j21.g1 PHD_FILE: MSMg01no352_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:14 2005
         (383 letters)



>mm_chr3_20294432_20295214
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaagtcagaatcctggaagcctctcaaaattcttcttgtgtactttcacatatactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtaagtcagaatcctggaagcctctcaaaattcttcttgtgtactttcacatatactct 524

                                                                       
Query: 61  ggaaaaatcttagcattttattcaatgaatacattaatgcaatattgctagtttatgcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaaaaatcttagcattttattcaatgaatacattaatgcaatattgctagtttatgcca 464

                                                                       
Query: 121 tcagtttcatctaattattaaaaagagctacctagtgtgaccgattgcctttctactgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcagtttcatctaattattaaaaagagctacctagtgtgaccgattgcctttctactgtt 404

                                                                       
Query: 181 gtagtcatctttctataatttactgatgaaaattatttttaaatccactttcatcaagct 240
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 403 gtagtcatctttctatactttactgatgaaaattatttttaaatcccctttcatcaagct 344

                                                                       
Query: 241 atatttaagataaaatcacaatgttcctggataagacattttgatattcattccttggga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atatttaagataaaatcacaatgttcctggataagacattttgatattcattccttggga 284

                                                                       
Query: 301 agacaaatacttgctctctccctattccttattttcctatatttctttgttgggagggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 283 agacaaatacttgctctctccctattccttattttcctatatttctttgttgggaggaaa 224

                                  
Query: 361 ctccattagatttccctttagac 383
           |||||||||||||||||||||||
Sbjct: 223 ctccattagatttccctttagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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