BAC Information

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BAC

Clone NameMSMg01-352L02
Chromosome3 (Build37)
Map Location 127,763,276 - 127,763,712
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352L02.T7 (MSMg01no352_l02.b1)MSMg01-352L02.TJ (MSMg01no352_l02.g1)
ACCAG463756AG463757
length788746
length of high quality
(start - end)
440 (52 - 491)449 (84 - 532)
definitionCHROMAT_FILE: MSMg01no352_l02.b1 PHD_FILE: MSMg01no352_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:20 2005CHROMAT_FILE: MSMg01no352_l02.g1 PHD_FILE: MSMg01no352_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCTCCTTCACTTCTTTCAGTTTTTACAAGGGATGTAGTC
CCTGAGCACCCAAAGGCTACTGGTTCTGGACCGACCCATTCTCGTCAGTT
AACCCAGAGACCATCAAGTCTTCTTTTGTAGATTAGGAGGGATGAGAGAA
TAGCATTTCCTTCATTGGGCCATACTAATTATGCTTAGTAATACTACTAA
AATTAATATTATCTATGATGTTTAACTATTAATAATAATGTAATAACACT
ATTTTATGTTTTAATAGATAATAAAAATAGGACCTTGTTCAAAGAAATGA
ATCTAGCAGTGAAATAAATGTTACAATTCTAATAGTGCTTTTAGTTATTT
AGGTAAAATTATTTAAATTGTGCGTGTTTTTCTGTGTGTACATGAGGGAG
AGAGAGAGACAAAGAGAGAGAGAGACTAAGAGAGAGAGAGATTGGGAGAG
GTATAGAGCGATACAGTTCTTTTTTCTTCTTCTCCTTCTTTTCTCCTCTC
TCTATACCCTCTTGTTTTTCCCCCTCCTCCCTCCTTTATTTCCCTTCCCC
TTCCCCCCCTTTTTTCCTTTCTCCGCTCTTCCTTCTCTCTTTTTCCCTTC
GTTTTTCCCTTTTCCTTCCCTTTTTTTTTCCCTCCCTTCTATCTTTTCCC
CCCCCCGCCCTTTTTTTTCCTTCATCCTCTCCTCGTGTTCCCATCCCTCC
TACTCATTCTGTTTCGCTATCTCTGTTACCGTTCCCTG
NNNNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTC
TTAACAGTCTGCTTTACGGGAACCTTTATTACCGTCGTTCCCCAGCTGAT
GAGTTCTGAATTCGGCAGTTGAATCCTTCTCAACAGTCTGTGTTACGGGA
ACCTTTATGAACGTGATCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCC
CTGCGCCAGTCCGGAGTTTTTTTCTCGTCCCGGAATTCGGCACCAATTGT
TATTCGACGCGTTCTCACGACCGGCCAGGAAGAACACCACAGACCAAAAT
CTTCTGCGGCAAAACTTTATTGCTTATATCTTCAGGAGCAAGCGTGTAAG
AAGCAAGAGAGCAGGAAGCAAGAGAGAGCCGAAAAAGCAGAATGGCGGGA
ACCCCGTCCCTCTTAAGGAGCATTCTCCTTCGCCTCGGACGTGTCACTCC
CTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCACGGTGAAAGCAGAG
CACAAGTAGTCATAAGATACCCTTGGTACATGCGCAGATTACTTGTCCAC
CATTTACCACACATGATGGTTTCGCCATCTTGGCACGTTGCATGTGGGTG
TCTTTTTCCCCCCCTGGCACATTACTCTTGCCTTGCCTCCCCCGCCACTT
TCCTTTTACCCCGTCTCCTTACCCTCCCTATTTCCATCCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_l02.b1 MSMg01no352_l02.b1 CHROMAT_FILE:
MSMg01no352_l02.b1 PHD_FILE: MSMg01no352_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:20 2005
         (440 letters)



>mm_chr3_127763072_127763912
          Length = 841

 Score =  791 bits (409), Expect = 0.0
 Identities = 430/439 (97%), Gaps = 5/439 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctcc---ttcacttctttcagtttttacaagggatgtagtccctgagcaccca 61
           |||||||||||     ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctccaag--cacgtctttcagtttttacaagggatgtagtccctgagcaccca 262

                                                                       
Query: 62  aaggctactggttctggaccgacccattctcgtcagttaacccagagaccatcaagtctt 121
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaggctactggttcttgaccgacccattctcgtcagttaacccagagaccatcaagtctt 322

                                                                       
Query: 122 cttttgtagattaggagggatgagagaatagcatttccttcattgggccatactaattat 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cttttgtagattaggagggatgagagaatagcatttccttcattgggccatactaattat 382

                                                                       
Query: 182 gcttagtaatactactaaaattaatattatctatgatgtttaactattaataataatgta 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcttagtaatactactaaaattaatattatctatgatgtttaactattaataataatgta 442

                                                                       
Query: 242 ataacactattttatgttttaatagataataaaaataggaccttgttcaaagaaatgaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataacactattttatgttttaatagataataaaaataggaccttgttcaaagaaatgaat 502

                                                                       
Query: 302 ctagcagtgaaataaatgttacaattctaatagtgcttttagttatttaggtaaaattat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctagcagtgaaataaatgttacaattctaatagtgcttttagttatttaggtaaaattat 562

                                                                       
Query: 362 ttaaattgtgcgtgtttttctgtgtgtacatgagggagagagagagacaaagagagagag 421
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaaattgtgtgtgtttttctgtgtgtacatgagggagagagagagacaaagagagagag 622

                              
Query: 422 agactaagagagagagaga 440
           |||| ||||||||||||||
Sbjct: 623 agacaaagagagagagaga 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)