Query= MSMg01no352_n01.b1 MSMg01no352_n01.b1 CHROMAT_FILE:
MSMg01no352_n01.b1 PHD_FILE: MSMg01no352_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:29 2005
(474 letters)
>mm_chr3_63349399_63350272
Length = 874
Score = 839 bits (434), Expect = 0.0
Identities = 461/470 (98%)
Strand = Plus / Minus
Query: 5 gaattctttgggataatgcatgtttccatcataaaactcctcctaatattccctgacctc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaattctttgggataatgcatgtttccatcataaaactcctcctaatattccctgacctc 615
Query: 65 taagtagatgtctttacagaagtctcatatcttagttgtgatatagattgtcaacttttt 124
|||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 614 taagcaggtgtctttacagaagtctcatatcttagttgtgatatagattgtcagcttttt 555
Query: 125 agaatataaagattattctggatgatgctacaattctgttcacctgtgagtttctcttga 184
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 554 agaatataaagattattctggatgatgctataattctgttcacctgtgagtttctcttga 495
Query: 185 acttatctcatgatatgcactgtttcttagacagttaacagaaaagttccatgtcgtccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acttatctcatgatatgcactgtttcttagacagttaacagaaaagttccatgtcgtccc 435
Query: 245 tgtcaggttcagaaaagatgagtaagccagagggagcaggacatgtcagacatggaaaga 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tgtcaggttcagataagatgagtaagccagagggagcaggacatgtcagacatggaaaga 375
Query: 305 attcggcagcctagcaacaagatgtcacaaggtagtctgatctgtgtcagtatgattgca 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 374 attcggcagcctagcaacaagatgtcacaaggtagtgtgatctgtgtcagtatgattgca 315
Query: 365 ctggaaaacccattattccagaaatgtgacagcaaaatatagataagcacagagtgaact 424
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctggaaaaggcattattccagaaatgtgacagcaaaatatagataagcacagagtgaact 255
Query: 425 aaattcctgtgatggcataaaataagggctgctatagatttctgaatatg 474
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 254 aaattcctgtgatggcataaaataagggctgttatagatttctgaatatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_n01.g1 MSMg01no352_n01.g1 CHROMAT_FILE:
MSMg01no352_n01.g1 PHD_FILE: MSMg01no352_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:30 2005
(434 letters)
>mm_chr3_63210806_63211639
Length = 834
Score = 816 bits (422), Expect = 0.0
Identities = 430/434 (99%), Gaps = 4/434 (0%)
Strand = Plus / Plus
Query: 1 attggcccaataaaacaagactccttaaacaagtcttgatacacaaactatttaagatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 attggcccaataaaacaagactccttaaacaagtcttgatacacaaactatttaagatgc 264
Query: 61 aagtggtttgcccggagtggtggctcatgcctttaatcccagcacttgggaggcagaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtggtttgcccggagtggtggctcatgcctttaatcccagcacttgggaggcagaggc 324
Query: 121 aggtggacttctgaattcaaggccagcctggtctacaaagtgagttacaggacagccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggtggacttctgaattcaaggccagcctggtctacaaagtgagttacaggacagccagg 384
Query: 181 tgctatacagaaaaaccctgtcttgaaaaacaaaacaaaaacaaacaaacaaaaaaaaaa 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctatacagaaaaaccctgtcttgaaaaacaaaacaaaaacaaacaaacaaaaaaaaa- 443
Query: 241 ccaaaaaaaaaaaaaaaaccaaaaacaaaaaaaccaaacaaacaaaaaaagaagcaagtg 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccaaaaaaaaaaaaa---ccaaaaacaaaaaaaccaaacaaacaaaaaaagaagcaagtg 500
Query: 301 gttttccaggagagcaggccttgtctccaactaatggaggtgtgggaattctctaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttccaggagagcaggccttgtctccaactaatggaggtgtgggaattctctaaaaca 560
Query: 361 aagggcaaagttgttaattttcaatatttctctggaaagcaaagtttttctagagtgaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagggcaaagttgttaattttcaatatttctctggaaagcaaagtttttctagagtgaac 620
Query: 421 aaaaatatcaactt 434
||||||||||||||
Sbjct: 621 aaaaatatcaactt 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
