Query= MSMg01no352_o09.b1 MSMg01no352_o09.b1 CHROMAT_FILE:
MSMg01no352_o09.b1 PHD_FILE: MSMg01no352_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:36 2005
(468 letters)
>mm_chr3_53694804_53695673
Length = 870
Score = 791 bits (409), Expect = 0.0
Identities = 451/471 (95%), Gaps = 14/471 (2%)
Strand = Plus / Minus
Query: 5 gaattccctt-ctttcctcgtctataagaaaacgctttctgttgtgtaaactcaaggttt 63
|||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 669 gaattcccttccttt-ctcgtctataagaaaacgctttctgttgtgtaaactcaagtttt 611
Query: 64 caactacatcggtatatgaaggctctgctcactgtcagaatca-cgcttcacacattgag 122
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 610 caactacatcggtatatgaaggctctgctcactgtcagaatcaccgcttcacacattgag 551
Query: 123 tataatgagagattgatttgctcctggcagatctgtttgttcctttagttctactgagat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tataatgagagattgatttgctcctggcagatctgtttgttcctttagttctactgagat 491
Query: 183 agcaagatgtagagaggagccagatggctgtgactgggaggaggggcagctctggaaaat 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 490 agcaagatgtagagaggagccagatggctgtgactgggaggaggggcaggtctggaaaat 431
Query: 243 aaaaaatgcatcgttgcatattctgtgagatatactgagtatctgcagatgatattttct 302
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 430 aaaaaatgcatcgttgcatgttctgtgagaaatactgagtatctgcagatgatattttct 371
Query: 303 tactcctgctaccagttacataaattttcaagatacacgcaggagctctgctattaccag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tactcctgctaccagttacataaattttcaagatacacgcaggagctctgctattaccag 311
Query: 363 agttt------tccccccacattcgacatttaacaggattttatttccaaaagagtacga 416
||||| | ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct: 310 agttttaaaaat-----cacgttcgacatttaacgggattttatttccaaaagagtacga 256
Query: 417 agcaccctctgagtatagcacatttatgttttccagaattcctgtgatgca 467
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agcaccctctgagtatagcacatttatgttttccagaattcctgtgatgca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space: 393880
Effective search space used: 393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_o09.g1 MSMg01no352_o09.g1 CHROMAT_FILE:
MSMg01no352_o09.g1 PHD_FILE: MSMg01no352_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:36 2005
(470 letters)
>mm_chr3_53573504_53574373
Length = 870
Score = 893 bits (462), Expect = 0.0
Identities = 468/470 (99%)
Strand = Plus / Plus
Query: 1 cacagagcagcttccatgaggttttcactcttttggtctgtcatcagtgagtggtctgta 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagcagcttccgtgaggttttcactcttttggtctgtcatcagtgagtggtctgta 260
Query: 61 atggagtttgagtatggtatttgtccatatcatcctagaaaaagacacacaagctactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggagtttgagtatggtatttgtccatatcatcctagaaaaagacacacaagctactta 320
Query: 121 ctttctacatctgttgtattattttatccctgttaatgccagaatttgctgaaagccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctacatctgttgtattattttatccctgttaatgccagaatttgctgaaagccttt 380
Query: 181 gaaatccaaatctattccactaacttaagaaggaaaaagagaaagacattccaatgttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatccaaatctattccactaacttaagaaggaaaaagagaaagacattccaatgttgc 440
Query: 241 cccaacttgtgttgaaaagagagaccatgctggctaccattttctgggttaaatccaatt 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 cccaacttgtgttgaaaagagagaccatgctgggtaccattttctgggttaaatccaatt 500
Query: 301 taaaacatagtagcgtaaaaacacttgttcaattatgctttcatttctgtgatataagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaacatagtagcgtaaaaacacttgttcaattatgctttcatttctgtgatataagaa 560
Query: 361 ttcaaaggtgacaccatgggagtggatgacactatttgacagtgtctggaacttcacttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaaggtgacaccatgggagtggatgacactatttgacagtgtctggaacttcacttg 620
Query: 421 agtacttgaagactgagtgtgacagctaagggctagaggcacaccctgcc 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtacttgaagactgagtgtgacagctaagggctagaggcacaccctgcc 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
