Query= MSMg01no352_o13.b1 MSMg01no352_o13.b1 CHROMAT_FILE:
MSMg01no352_o13.b1 PHD_FILE: MSMg01no352_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:37 2005
(435 letters)
>mm_chr3_79084110_79084943
Length = 834
Score = 772 bits (399), Expect = 0.0
Identities = 426/435 (97%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 1 tctgcagttggtctggagatgcagatgggtgcacgctacagaacaggtatagccaacaaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctgcagttggtctggagatgcagatgggtgcacgctacagaacaggtatagccaacaag 449
Query: 61 tactgactcttgtggtgccttctggtagaaagagtagcttcaggaacgagctgcatatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tactgactcttgtggtgccttctggtagaaagagtagcttcaggaacgagctgcatatgc 389
Query: 121 atcagttgtttcttgatatgattcatggggaatgtgatatttgactaagaagagttggac 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 388 atcagttgtttcttgatatgattcatggggaatatgatatttgactaagaagagttggac 329
Query: 181 actcccagcctagccgaggctgagtgaggctggagcatgccccgggggttttcgcaccag 240
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct: 328 actcccagcctagccgaggctgagtgaggctggagcatgccc-ggggttttttgcaccag 270
Query: 241 tctgttaacaagcactagccagtcagggttcctcagtgaagagtctcaaatggccacaaa 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 269 tctgttaacaagcactagccagtcagggttcctcagtgaagagtctcaaaaggccacaaa 210
Query: 301 actaaagaagttaagtatacttattgctcttgagaggacccgggttcaattcctactacc 360
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 209 actaaagaagttaagtatacttattgctcttgagaggacgggggttcaattcctactacc 150
Query: 361 ctatcatttgtaactccagctccaggggatccagtgcccttttttgaccaccatgtgcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 149 ctatcatttgtaactccagctccaggggatccagtgcccttttttgaccaccatgggcac 90
Query: 421 cagacttgctcacat 435
|||||||||||||||
Sbjct: 89 cagacttgctcacat 75
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 834
Length adjustment: 9
Effective length of query: 426
Effective length of database: 825
Effective search space: 351450
Effective search space used: 351450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no352_o13.g1 MSMg01no352_o13.g1 CHROMAT_FILE:
MSMg01no352_o13.g1 PHD_FILE: MSMg01no352_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:37 2005
(537 letters)
>mm_chr3_78933175_78934109
Length = 935
Score = 919 bits (475), Expect = 0.0
Identities = 526/551 (95%), Gaps = 16/551 (2%)
Strand = Plus / Plus
Query: 1 cactgtaaagaagcatccttgggaagctggatctgactcacttaacatcaggcttcagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cactgtaaagaagcatccttgggaagctggatctgactcacttaacatcaggcttcagat 246
Query: 61 acattcttaaatggttacataacaacactaatttttcagaacaagaaaggatttctttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acattcttaaatggttacataacaacactaatttttcagaacaagaaaggatttctttat 306
Query: 121 ataaaagaaagaaaagagatgtgctgtctgcagtgcttctttctgtcctccatactgtga 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ataaaaaaaagaaaagagatgtgctgtctgcagtgcttctttctgtcctccatactgtga 366
Query: 181 gactgttatgccagagc-tccccatacgaaaatttcaattacatacatgaaatgtctt-- 237
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 367 gactgttatgccagagccttcccatactaaaatttcaattacatacatgaaatgtcttcg 426
Query: 238 -----------aatgaaaactcactctttagactgatgcccgtcattaatcagattcccc 286
|||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 427 ccttttattttaatgaaaactcactctttagactgatgcccatcattaatcagattcccc 486
Query: 287 aagtaatgtctgtctttcatgctaaataactcatttatttttctatgacagttatttata 346
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aagtaatgtctatctttcaagctaaataactcatttatttttctatgacagttatttata 546
Query: 347 tttgcaatgtatggttaaaaaatgataaattaaaatatcagacaatttccatatcatcaa 406
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 547 tttgcaatgtatgcttaaaaa-tgataaattaaaatatcagagaatttccatatcatcaa 605
Query: 407 ataactgtattaaaaatcttagaccattctaaactcccgggtcttcccaccacgcagaca 466
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ataactgtattaaaaatct-agaccattctaaactcccgggtcttcccaccacgcagaca 664
Query: 467 gcacatctgaatgaacagcagaagttttcacttgaaccctaacaatctgatacagagcag 526
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 665 gcacatctgaatgaacagcagaagtttttacttgaaccctaacaatctgatacagagcag 724
Query: 527 gcgcaaccttt 537
|||||||||||
Sbjct: 725 gcgcaaccttt 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 935
Length adjustment: 10
Effective length of query: 527
Effective length of database: 925
Effective search space: 487475
Effective search space used: 487475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
