BAC Information

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BAC

Clone NameMSMg01-353A19
Chromosome3 (Build37)
Map Location 41,757,656 - 41,758,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
Downstream geneLOC666031, LOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353A19.T7 (MSMg01no353_a19.b1)MSMg01-353A19.TJ (MSMg01no353_a19.g1)
ACCAG464024AG464025
length762801
length of high quality
(start - end)		545 (52 - 596)435 (83 - 517)
definitionCHROMAT_FILE: MSMg01no353_a19.b1 PHD_FILE: MSMg01no353_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:48 2005CHROMAT_FILE: MSMg01no353_a19.g1 PHD_FILE: MSMg01no353_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAA
AATTCAGGTGACAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACT
CCTTCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAG
TCTGGCAGTGCCTCAGAAAACTGGACATAGCATGACCAGCGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAAGGTGG
TACATTTACACAATAAAACAATAAATTCATGAAATTCTTAGGCAAATGGA
TGGATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAGGAAC
TCACATGATATGAACTCACTGATAAGCAGATATTAGCCCAGAAACTTAGA
ATACCCAAGATACAATCTCAAAACACATGAAACTCAAGAAGGAAGACCAA
ATTGTGGATACTTCATTTCTTCTTAGAATGGGGAACAAAACTCCTCCATG
GAANGAGTTACTAAGTTCAGAGCTAAGACGGAAAGAATGACCATCCCGAG
ACTGCCCCATCTGAAGATCCATTCCTTATTCAACCACCAAACCCAGACCT
TATTGTTTATGN

NNNNGGCAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAAATTAAAGTGTGA
TAAGCCAACAGGCAGGCAAACACACAAGCAAATAGACTAGCAAGCAGCAG
AATGACAGGCATGCATGTAGGCAGGCAAACAGACAGACAGACAGGCAGAC
ACAGCAAGACACAGACAGACAGACAGACAGACAGACAGACAGACAAAGAA
GCAAACAGGCAGGTGAGCAAACATGAAAAAAAGGCAGGCAGGCAGACAGG
AGAGCAAGCAGTTGTTCACAAAGGACAGGGAGAAGCAGTGAGGTAGGAAT
TAAGCAGACACAAGGAAGGCAGAGGTTCACAACTCCTGGAGAGTGAGACA
AATACAGGATCAGAAGTCAAGCAGGCAAGCCAACAACAGGAAGGTATGAC
TATCACAGAGCAAAGGANAGCAGATGGCCAAAGCCCTGGACAGGCAGTAC
AGAGCCAGGAGCTTTGCAAAAATGCAGAGAGAGGCCAAAGTGGGCAAGAA
AACAGATTGATACTCATGGAAAACGGATGGCATATTTATGCCTCTTTATG
CCTAAAACCCGCCGAAGCAGGGCATTTGATTTCCACCAGGTGACCCACTT
GTACTTTGAAATCCGGAGGTTCCCTTTTGCTGGGGTATTGAGAAACCTAC
CAACCTTTACCCCTAAACTTTTTTTATCCTTAATTTGGGAAAAAGAAAAT
TACTGTGCGGCCCTCTTCNNTTCTTTACATATTCTGTAGCGCTCTCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_a19.g1 MSMg01no353_a19.g1 CHROMAT_FILE:
MSMg01no353_a19.g1 PHD_FILE: MSMg01no353_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:48 2005
         (435 letters)



>mm_chr3_41757239_41758073
          Length = 835

 Score =  679 bits (351), Expect = 0.0
 Identities = 402/436 (92%), Gaps = 29/436 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaaattaaagtgtgataagccaacaggcaggcaaacacacaagcaaatagactagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 actgaaattaaagtgtgataagccaacaggcaggcaaacacacaagcaaatagactagca 766

                                                                       
Query: 61  agcagcagaatgacaggcatgcatgtaggcaggcaaacagacagacagacaggcagacac 120
           |||||||||||||||||||||||  |||||||    |||||||||||||    |||||||
Sbjct: 765 agcagcagaatgacaggcatgcacataggcag----acagacagacaga----cagacac 714

                                                                       
Query: 121 agcaagacacagacagacagacagacagacagacagacagacaaagaagcaaacaggcag 180
           ||||| ||                    ||||||||||||||||||||||||||||||||
Sbjct: 713 agcaatac--------------------acagacagacagacaaagaagcaaacaggcag 674

                                                                       
Query: 181 gtgagcaaacatg-aaaaaaaggcaggcaggcagacaggagagcaagcagttgttcacaa 239
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 673 gtgagcaaacatgaaaaaaaaggcaggcagacagacaggagagcaagcagttgttcacaa 614

                                                                       
Query: 240 aggacagggagaagcagtgaggtaggaattaagcagacacaaggaaggcagaggttcaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aggacagggagaagcagtgaggtaggaattaagcagacacaaggaaggcagaggttcaca 554

                                                                       
Query: 300 actcctggagagtgagacaaatacaggatcagaagtcaagcaggcaagccaacaacagga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 actcctggagagtgagacaaatacaggatcagaagtcaagcaggcaagccaacaacagga 494

                                                                       
Query: 360 aggtatgactatcacagagcaaagganagcagatggccaaagccctggacaggcagtaca 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 493 aggtatgactatcacagagcaaaggaaagcagatggccaaagccctggacaggcagtaca 434

                           
Query: 420 gagccaggagctttgc 435
           ||||||||||||||||
Sbjct: 433 gagccaggagctttgc 418


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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