BAC Information

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BAC

Clone NameMSMg01-353F05
Chromosome3 (Build37)
Map Location 150,853,293 - 151,039,027
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040455, LOC100040463, LOC623554
Downstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353F05.T7 (MSMg01no353_f05.b1)MSMg01-353F05.TJ (MSMg01no353_f05.g1)
ACCAG464231AG464232
length758789
length of high quality
(start - end)		541 (50 - 590)446 (82 - 527)
definitionCHROMAT_FILE: MSMg01no353_f05.b1 PHD_FILE: MSMg01no353_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:10 2005CHROMAT_FILE: MSMg01no353_f05.g1 PHD_FILE: MSMg01no353_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,853,293 - 150,853,828)(151,038,582 - 151,039,027)
sequence
NNNCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACAGGTAGCAGGAAGAGAATGCCACATGGGGTGTCTTGAG
CTTTTTATACCTCAAAACCTAGCCTCTAGTGGCATACCTCCTTCAACAAA
ATCAAACCGACTCAAACAAAGTAGCAACCTCAATAGTGCCATTCCCTATG
GCAAAGCATTCAAACACATGAGTCTATGAGGATCATACCTATTCAAACCA
CCACACATATCATTAGTAAGCTATGTAAGTCATTCATGTAAAAAATTTAA
GAGTTGTCCTTATAGAGTTCTGAGTTGTACTTTGGTTACCAGAGGCTGGG
GAATGTAGAAACAGGAAAAGCAAGGTGGACTAATGGATGCTCAATGGTAG
TTAGACAGAAGCCAAATGTTTTGGAATACTTTTACATAGTAGGGCAACTA
TAACAATACCAATAATGACAACAACAATAAATCCCATATTTCTAAAAAGC
TATTCGATGACATAATATCTGATGCCTCAGAACAATGATCCCAGCTTCTT
TGGGGTTGAGGCTTGAGAATCACACACTCAGGGTCTCTCTGAACTGTACA
CAGTGCTTCCATGATCAAACAGAGCAAGTTATTGAGACCCTGCCTCAAAT
TGAAAAATAAAGAGAAAGCCGCGGTTACAGCTTGTTGGGAAAGCATTTGC
CAACTAGATTGAAGCCTAAAGTCTAAAACCAAGACGGAAAAACAAATGCT
ACCAAGCC

NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTTGCAGTGGTATCAAG
AGACCAAGACACTTAAGTTTATTGTTATTCTTCTCACAAAGGTAGCCTAC
TTCTTTCTTTCTTTTTCTTTCCTCTTTCCTAACTTGGAAAATTTAGGAAA
TTATCAAAGAAGAAACATTCATCTTTGATATGGGACTTTATAGTAGTGGA
GAAGCTATTTTTTAAATGCCAGATTATTAGTAAATAATTTGATTTCCATT
ATTAGTATGTAGGAAATAGTAACTCAGGAATTAGAAAGGGCTGATTCCAT
TGAATCTGTAGACTTGTTCAACTATAGTTGCTCCAGGGCCTCATTAGATA
TAGTGTGTCTGAGAATCACAAACTGCATTGGAAACCAACAGTGATTGAAA
TTATTGCCATAGAACTTGGGGCACTAGAGGATATACGGATAGATATTTCA
GAACAATCGTGTCAGAATGAGGGAATTAAAACAAAAGCATTTTACTAATT
ATATAACACACACACAACATTTGTGATTTACTTACTTAGCAACAATAGCA
ACATGTCTGACCTCCAACTTACAACACCGATGTCAGGGGATATACCAATT
TTGTTGGTTCGTTCCCCCAGAATTCATGGCATTCTTTCCCTATTTTTTTC
GATTCCTTAGCTATTTTTTATCCCTTTAACCTCGTTTTGGGGTCGTTCCT
TCTCTTCCCTTTGTTTATTATATATTCCGCCCTTTGTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_f05.b1 MSMg01no353_f05.b1 CHROMAT_FILE:
MSMg01no353_f05.b1 PHD_FILE: MSMg01no353_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:10 2005
         (541 letters)



>mm_chr3_150853088_150854028
          Length = 941

 Score =  951 bits (492), Expect = 0.0
 Identities = 525/536 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattccacaggtagcaggaagagaatgccacatggggtgtcttgagctttttatacctca 65
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aattccacaggtagcaggaagagaatgccacacggggtgtcttgagctttttatacctca 265

                                                                       
Query: 66  aaacctagcctctagtggcatacctccttcaacaaaatcaaaccgactcaaacaaagtag 125
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaacctagcccctagtgacatacctccttcaacaaaatcaaaccgactcaaacaaagtag 325

                                                                       
Query: 126 caacctcaatagtgccattccctatggcaaagcattcaaacacatgagtctatgaggatc 185
           |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 caacctcagtagtgccattccctatggaaaagcattcaaacacatgagtctatgaggatc 385

                                                                       
Query: 186 atacctattcaaaccaccacacatatcattagtaagctatgtaagtcattcatgtaaaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atacctattcaaaccaccacacatatcattagtaagctatgtaagtcattcatgtaaaaa 445

                                                                       
Query: 246 atttaagagttgtccttatagagttctgagttgtactttggttaccagaggctggggaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atttaagagttgtccttatagagttctgagttgtactttggttaccagaggctggggaat 505

                                                                       
Query: 306 gtagaaacaggaaaagcaaggtggactaatggatgctcaatggtagttagacagaagcca 365
           ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 gtagaaaaaggaaaagcaaggtggactaatggatgctaaatggtagttagacagaagcca 565

                                                                       
Query: 366 aatgttttggaatacttttacatagtagggcaactataacaataccaataatgacaacaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aatgttttggaatacttttacatagtagggcaactataacaataccaataatgacaacaa 625

                                                                       
Query: 426 caataaatcccatatttctaaaaagctattcgatgacataatatctgatgcctcagaaca 485
            |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 626 taataaatcccatatttctaaaaagctattcgatgatgtaatatctgatgcctcagaaca 685

                                                                   
Query: 486 atgatcccagcttctttggggttgaggcttgagaatcacacactcagggtctctct 541
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 686 atgatcccagcttctttggggttgaggcatgagaatcacacactcagggtctctct 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no353_f05.g1 MSMg01no353_f05.g1 CHROMAT_FILE:
MSMg01no353_f05.g1 PHD_FILE: MSMg01no353_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:10 2005
         (446 letters)



>mm_chr3_151038382_151039227
          Length = 846

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttgcagtggtatcaagagaccaagacacttaagtttattgttattcttctcacaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgttgcagtggtatcaagagaccaagacacttaagtttattgttattcttctcacaaag 587

                                                                       
Query: 61  gtagcctacttctttctttctttttctttcctctttcctaacttggaaaatttaggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gtagcctacttctttctttctttttctttcctctttcctaacttggaaaatttaggaaat 527

                                                                       
Query: 121 tatcaaagaagaaacattcatctttgatatgggactttatagtagtggagaagctatttt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 526 tatcaaagaagaaacattcatctttgatatgggactctatagtagtggagaagctatttt 467

                                                                       
Query: 181 ttaaatgccagattattagtaaataatttgatttccattattagtatgtaggaaatagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttaaatgccagattattagtaaataatttgatttccattattagtatgtaggaaatagta 407

                                                                       
Query: 241 actcaggaattagaaagggctgattccattgaatctgtagacttgttcaactatagttgc 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 actcaggaattagaaagggatgattccattgaatctgtagacttgttcaactatagttgc 347

                                                                       
Query: 301 tccagggcctcattagatatagtgtgtctgagaatcacaaactgcattggaaaccaacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tccagggcctcattagatatagtgtgtctgagaatcacaaactgcattggaaaccaacag 287

                                                                       
Query: 361 tgattgaaattattgccatagaacttggggcactagaggatatacggatagatatttcag 420
           |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 286 tgattgaaattattgccatagaacttggggcactagaggataaacagatagatatttcag 227

                                     
Query: 421 aacaatcgtgtcagaatgagggaatt 446
           | |||||||||||||| |||||||||
Sbjct: 226 agcaatcgtgtcagaacgagggaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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