Query= MSMg01no353_m09.b1 MSMg01no353_m09.b1 CHROMAT_FILE:
MSMg01no353_m09.b1 PHD_FILE: MSMg01no353_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:44 2005
(531 letters)
>mm_chr3_131490274_131491204
Length = 931
Score = 861 bits (445), Expect = 0.0
Identities = 494/527 (93%), Gaps = 26/527 (4%)
Strand = Plus / Plus
Query: 5 gaattcaaaattttgagaagtgaagggagaagaaagaaacttgtgtaaaaccgctcagaa 64
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaaaattaagagaagtgaagggagaagaaagaaacttgtgtaaaaccactcagaa 264
Query: 65 tcctggcttacgggtgttgggaaagccatctatctatgtaatcttcccaccctactggct 124
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcctggtttacgggtgttgggaaagccatctatctatgtaatcttcccaccctactggct 324
Query: 125 tcaagttattggaccttggttctgactgttgtacgtgaaagagaaccagtcccgtagtct 184
|| ||||||||||||||||||||||||||||||||
Sbjct: 325 tc--------------------------ttgtacgtgaaagagaaccagtcccgtagtct 358
Query: 185 atgtcagagttttctgggtttaacattttctttcctgtttaaagctcatgcatgttcctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgtcagagttttctgggtttaacattttctttcctgtttaaagctcatgcatgttcctg 418
Query: 245 atttacttaagtgtatatgctactggccccattcatgtctccagctttttccatatcaca 304
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 419 atttacttaagtgtatatgctactggccccaggcatgtctccagctttttccatatcaca 478
Query: 305 ggaggtcttttcctttgctggaaaggggtctgcctaagccaagtgccctgtgtgggcagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggaggtcttttcctttgctggaaaggggtctgcctaagccaagtgccctgtgtgggcagc 538
Query: 365 tacaagtggacccaatgatactcccgcagctgatcttgctgtttggggaaagcctgttca 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cacaagtggacccaatgatactcccgcagctgatcttgctgtttggggaaagcctgttca 598
Query: 425 aagcagtgctcatttccttgatgcctgcagtctcagataaagtgtttggacttgtgtttc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagcagtgctcatttccttgatgcctgcagtctcagataaagtgtttggacttgtgtttc 658
Query: 485 ttgttggggcactaacaccctttgctctgcttaatgtcccaggagtc 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ttgttggggcactaacaccctttgctctgcttaatgtcccaggagtc 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_m09.g1 MSMg01no353_m09.g1 CHROMAT_FILE:
MSMg01no353_m09.g1 PHD_FILE: MSMg01no353_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:44 2005
(445 letters)
>mm_chr3_131683817_131684660
Length = 844
Score = 654 bits (338), Expect = 0.0
Identities = 364/374 (97%), Gaps = 5/374 (1%)
Strand = Plus / Minus
Query: 74 tacatatttaatttatgtgtatttacctggctgagtttacatgtgggacacatgtattaa 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tacatatttaatttatgtgtatttacctggctgagtttacatgtgggacacatgtattaa 785
Query: 134 tgccaaagatgtcagaagagggtgtcgggcccgctattactagaattacagatagctgta 193
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 784 tgccaaagatgtcagaagagggtgttgggcccgctattactagaattacagatagctgta 725
Query: 194 agtccccatgtgggtgctgagaacctggggaccaaacctggttcttctgctatagtgacc 253
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct: 724 agtccccatgtgggtgctgagaacctgtggaccaaacctggttcttctgctagagtgaac 665
Query: 254 tgagcagtctatccagtccctatagcaatcctaaagatccaaagaaaacgttttcctata 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgagcagtctatccagtccctatagcaatcctaaagatccaaagaaaacgttttcctata 605
Query: 314 tattttttcctattgcaatttcaataaacccaatgacccact--ccccccccaaaaagag 371
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 604 ta-tttttcctattgcaatttcaataaacccaatgacccactccccccccccaaaaagag 546
Query: 372 aaacagccaatgatgtcaaggtcactttgattcaatcagaactgaacacccccccccctt 431
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 545 aaacagccaatgatgtcaaggtcactttgattcaatcagaactgaaca--accccccctt 488
Query: 432 aaatttccattata 445
||||||||||||||
Sbjct: 487 aaatttccattata 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space: 362790
Effective search space used: 362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
