Query= MSMg01no353_m22.b1 MSMg01no353_m22.b1 CHROMAT_FILE:
MSMg01no353_m22.b1 PHD_FILE: MSMg01no353_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:47 2005
(537 letters)
>mm_chr3_23448700_23449636
Length = 937
Score = 1000 bits (517), Expect = 0.0
Identities = 529/533 (99%)
Strand = Plus / Plus
Query: 5 gaattctcaatatatgacactcaagtggctgagaaatacctaagatatgttcaacatcct 64
|||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 205 gaattctcaatataggaaactcaagtggctgagaaacacctaagatatgttcaacatcct 264
Query: 65 taaccatcaggggagtgaaaattaaaactactttgatattccatcttatacctggaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaccatcaggggagtgaaaattaaaactactttgatattccatcttatacctggaaaaa 324
Query: 125 ttgctaacacaaatgacagttcatgttggtgaagaagactcctccattgctagtgtgagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgctaacacaaatgacagttcatgttggtgaagaagactcctccattgctagtgtgagt 384
Query: 185 acgaacttgtaaagctactatcgaatcaatctggtggttcctcaaaaatatgggaatcaa 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgaacttgtaaagctactatcaaatcaatctggtggttcctcaaaaatatgggaatcaa 444
Query: 245 ttttttctcaagatccagctatactactcttgggcatataggcaatttcataaatgaatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttttctcaagatccagctatactactcttgggcatataggcaatttcataaatgaatg 504
Query: 305 aacacataattagtaggcttgaacaatttacaacagccaaaaagattttaaaaagaaatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacacataattagtaggcttgaacaatttacaacagccaaaaagattttaaaaagaaatt 564
Query: 365 tggatttgtatctatgattttaaagtcacaaaacattttctttaataatcatctacttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggatttgtatctatgattttaaagtcacaaaacattttctttaataatcatctacttca 624
Query: 425 aaatttgaaaggttaataacatatttttctttattttttactaggaaagggggatatata 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaatttgaaaggttaataacatatttttctttattttttactaggaaagggggatatata 684
Query: 485 tgcagaagtcttaggctgtggctatataataggtaaatataattttatacgaa 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgcagaagtcttaggctgtggctatataataggtaaatataattttatacgaa 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_m22.g1 MSMg01no353_m22.g1 CHROMAT_FILE:
MSMg01no353_m22.g1 PHD_FILE: MSMg01no353_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:47 2005
(422 letters)
>mm_chr3_23604661_23605482
Length = 822
Score = 582 bits (301), Expect = e-170
Identities = 344/363 (94%), Gaps = 10/363 (2%)
Strand = Plus / Minus
Query: 1 agtagataagtaacaaattggaatttatattcctgatcccctaacttataaaatctataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agtagataagtaacaaattggaatttatattcctgatcccctaacttataaaatctataa 302
Query: 61 tgcatgtgaacatattcattttagggcttttctgttgttgttattgcttgtacagtatat 120
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agcatatgaacctattcattttagggcttttctgttgttgttattgcttgtacagtatat 242
Query: 121 ttttgttttaagtttattttccacagccttgaatgtaattctttaattataatatatatt 180
||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 241 ttttgctttaagtttattttccacagacttgtatgtaattctttaattataatatatatt 182
Query: 181 tcatataatattccatgtaaaaaaatcaatcatttgtttttaagatgagtagatttcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatataatattccatgtaaaaaaatcaatcatttgtttttaagatgagtagatttcaag 122
Query: 241 gagctaagagatgaacatgtgccaaaggacaggtatggagatatatatatatatatatat 300
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 121 gagctgagagatgaacatgtgccaaaggacaggtatggatatatatatatatatatatat 62
Query: 301 atatatatat------atatatatactta--tatgtatatatattgaatatgaaatatat 352
|||||||||| ||||||||| || ||| |||||||||||||||||||||||||
Sbjct: 61 atatatatatacacacatatatata--taagtatatatatatattgaatatgaaatatat 4
Query: 353 ata 355
|||
Sbjct: 3 ata 1
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 282 tatatatatatatatatatatatatatatatat 314
|||||||||||||||||||||||||||||||||
Sbjct: 51 tatatatatatatatatatatatatatatatat 83
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 284 tatatatatatatatatatatatatatatatat 316
|||||||||||||||||||||||||||||||||
Sbjct: 51 tatatatatatatatatatatatatatatatat 83
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 286 tatatatatatatatatatatatatatatatat 318
|||||||||||||||||||||||||||||||||
Sbjct: 51 tatatatatatatatatatatatatatatatat 83
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 288 tatatatatatatatatatatatatatatata 319
||||||||||||||||||||||||||||||||
Sbjct: 51 tatatatatatatatatatatatatatatata 82
Score = 62.6 bits (32), Expect = 5e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 281 atatatatatatatatatatatatatatatat 312
||||||||||||||||||||||||||||||||
Sbjct: 52 atatatatatatatatatatatatatatatat 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 6
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
