NTTTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAACTGACGAATACCGAATGGCTGAGAAGCACCTGAAAA
AATGTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAGCAACCCTG
AGATTCCATCTCACACCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGA
CAGCAGATGCTGGTGAGGATGTGGAGAAGGAGGAACACTCCTCCATTGTT
GGTGTGATTGCAAGCCTGTACAACCACTCTGGAAATCAGTCTGGCAGTTC
CTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAACCTTATTTATAGTAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAAGAATGGATACAGAAAATGTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
GCAAATGGGTGGACCTGGAGGGCATCAAACTGAGTGAGGTAACCCAATCA
CAAAAGAACTCACAGGATATGTACTCACTGATAAGTGGATATCTAGCTCA
GAAACTTATAATACCCAAGATACAATCTGCAAAACACATGAAACTCAAGA
AGAATGAACACCGANATGTGGACACTTTGCCTCTTTTCA

CCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCCTTGGAAGATA
ACGTGATCTTGTCAGGTTGTTAGAGAGCCCTTACTCTGCAGAAATGATAC
AGCGAATAGATCTGTTGCTGAAAGAAATTGACACTGTGTAGTAATAGTAT
TAAGAGTTTCTTGGGCCTTCCCAGGGGAATAACATTTTACCAAATTTACA
CTTGCCTTATAATGATATTACATATATCAGGGTAGGTAACAGAATGGCTT
ATGCAGTCTTTTCTAGGTGGATAACTTTGTAACATTGAAATGCAAAGCTA
ATGAAAATTTTTGCTTAAAGTGTAATTATTGGCTATAAGATGAATAATCA
TATTAGAACTGAACTATAAGCAACAAATGCAGAAAATTTCAGATAATATA
ATTATCCACAAGATGGCAGCAAACATTTACCTATGTTCTGATACTTACAG
CACAAAATTATTCCATTTTGTTGAAATTTTTTTCCTTAAGATTTGCTTAT
GCATTGAAAAATTTGGTGACATGAGTAAGCTCTTTTCTGAGCTTAAGGCT
TTCCACATAGTAAAATAATTCAAAGCCCCTCATTTAATGTCTTATTTGAT
AATATCTTGCCCTATTGAAAAAAGTACGCCTCCAAATATGTCTGTTCACA
TGATACACATATATGTCCCACTGTCACTTTTTTAA

Query= MSMg01no354_a02.g1 MSMg01no354_a02.g1 CHROMAT_FILE:
MSMg01no354_a02.g1 PHD_FILE: MSMg01no354_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:02 2005
         (471 letters)



>mm_chr3_27009716_27010587
          Length = 872

 Score =  851 bits (440), Expect = 0.0
 Identities = 464/476 (97%), Gaps = 9/476 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggccccttggaagataacgtgatcttgtcaggttgt----tagagagcccttactctg 56
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 672 aaggccccttggaagataacgtgatcttgtcaggttgttagatagagagcccttactctg 613

                                                                       
Query: 57  cagaaatgatacagcgaatagatctgttgctgaaagaaattgacactgtgtagtaatagt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagaaatgatacagcgaatagatctgttgctgaaagaaattgacactgtgtagtaatagt 553

                                                                       
Query: 117 attaagagtttcttgggccttcccaggggaataacattttaccaaatttacacttgcctt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 attaagagtttcttgggccttcccaggggaataacattttaccaaatttacacttgcctt 493

                                                                       
Query: 177 ataatgatattacatatatcagggtaggtaacagaatggcttatgcagtcttttctaggt 236
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 492 ataatgatattacatatatcagggtaagtaacagaatggcttatgcagtcttttctaggt 433

                                                                       
Query: 237 ggataactttgtaacattgaaatgcaaagctaatgaaaatttttgcttaaagtgtaatta 296
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 432 ggataactttgtaacattgaaatgcaaagctaatgaaaagttttgcttaaagtgtaatta 373

                                                                       
Query: 297 ttggctataagatgaataatcatattagaactgaactataagcaacaaatgcagaaaatt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttggctataagatgaataatcatattagaactgaactataagcaacaaatgcagaaaatt 313

                                                                       
Query: 357 tcagataatataattatccacaagatggcagcaaacatttacctatgttctgatacttac 416
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 312 tcagataatataattatccacaagatggcagcaaacatttacctatgttctga----tac 257

                                                                   
Query: 417 agcacaaaattattccattttgttgaaattttttt-ccttaagatttgcttatgca 471
           ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 256 agcacaaaattattccagtttgttgaaatttttttgccttaagatttgcttatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 872
Length adjustment: 10
Effective length of query: 461
Effective length of database: 862
Effective search space:   397382
Effective search space used:   397382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)