BAC Information

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BAC

Clone NameMSMg01-354D08
Chromosome3 (Build37)
Map Location 17,174,675 - 17,174,998
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354D08.T7 (MSMg01no354_d08.b1)MSMg01-354D08.TJ (MSMg01no354_d08.g1)
ACCAG464894AG464895
length751761
length of high quality
(start - end)		600 (52 - 651)422 (82 - 503)
definitionCHROMAT_FILE: MSMg01no354_d08.b1 PHD_FILE: MSMg01no354_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:18 2005CHROMAT_FILE: MSMg01no354_d08.g1 PHD_FILE: MSMg01no354_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTATATAGTCAATTGTCCCCAGTCAAGAACTACACCAGGA
GAGAGGAATAGTGTTTAAAATAAAATAAAATAAAATAAAATAAAATAAAA
TAAAAACAGTACAAAAACCAAACAACAACAAAAAGATGCTAGATATACAA
ATGACGAGAGAGAGAGACAGAGAGAGACAGAGACAGAGACAGAGACACAG
ACAGAGACAGAGACAGAGACAGAGAGAAGGAAGGAAAATGGATTTCAGAG
CTCTCCCAGAGGCAGAAGGAAATCAAGAGACATCCTGCTTCCTCTCTGGC
CCTACAGGAGACTTCCTTAGTTCTGGTTTTATCAAGTTCCTTTCTCTCTA
TATATTGTCTGTCCTTAGTGCACCAATCTGTCCATGTGTTAATTTGTGTC
TGTTTTCGCTTCGTTGTCTGAATGACTGCTGTTCAATGTTTCATGTTGAA
AAGAAAAAATGGTTAAAACTTTATCTTTTGGCTATCCATCTCTTGATTCT
GTCTCAGTTTGCACAGTGGAGGTTAATTTAAGTTGCCCTGCTCCTTTAGC
AAGGAGTCAAGTGCAACAGAAGCCCTACTGAAAAGTTGTTTTTAAAATGG
ATCAGTNGGGTATTTTGTTCCCCATTCTAAGGAGGAAAGAAGTATGCATA
CTTTGGTCTTCCTTCCTAAGTTTCATGTGTTTTGAAAAATGTATCTTGGG
N

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGGTACTGGTTAGTTT
ACTCATCACACACTTCCTTTTAATCCAGGGCCACTGCTACCATGAAATCA
GACAAACTAACTGCAGATCTTCACTCCTCCTTTTCCTTTTTAGTTCCAAA
GTTACCATTCTCATCCCCATCTCTGTAGTAGAACACCTGATGGTTTCTCT
TTCCTTCCTTCAGTGAGACTGGGTCTAAAAGATTATAAAGAGAGATGGAA
ATTTGCTGTCATCCTACTAGGTTTCATGGCAGAAAGGGCCTCTGCAATAG
CAAGGGGTGGCTGTTGGAGTTGGGAGCTGTTTCTCTAGCCCACTTTTCTT
GTGTATTCTCAAGGAATGAAAATATATCTTATAATATGAGTAAAACAATC
AATTACTAAAAATCTCCAAAACTGATAGAACTGTCAAAAACTGCTAGACT
CTGTATGTGGTTCAGATTTTTTCTTTTGAAATGTCATTTCTACATACTTA
AAAAGATTATTAAGAAATACAATTTGAGAAAAATATCTTTTAAATGTTAT
CAATATTTTCAAAACACACAAATAAATTCCATGGACAACTATCTCNCCAT
AAATGAGACATAATTATTAACTAAATTAACAAAGGAGTGTACTGGGAGTA
ATGGATGCACCCTGGGGTAAAAAACAAAAAAAAGAAAAAATTCTCCACTA
ACTCCATGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_d08.g1 MSMg01no354_d08.g1 CHROMAT_FILE:
MSMg01no354_d08.g1 PHD_FILE: MSMg01no354_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:18 2005
         (422 letters)



>mm_chr3_17174177_17174998
          Length = 822

 Score =  565 bits (292), Expect = e-165
 Identities = 316/324 (97%)
 Strand = Plus / Minus

                                                                       
Query: 99  cttttcctttttagttccaaagttaccattctcatccccatctctgtagtagaacacctg 158
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 822 cttttcctttttagttctaaagttaccattctcatccccatctctgtagtagaacacttg 763

                                                                       
Query: 159 atggtttctctttccttccttcagtgagactgggtctaaaagattataaagagagatgga 218
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atagtttctctttccttccttcagtgagactgggtctaaaagattataaagagagatgga 703

                                                                       
Query: 219 aatttgctgtcatcctactaggtttcatggcagaaagggcctctgcaatagcaaggggtg 278
           |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 702 aatttgctatcatcctactaggtttcatggcagaaacggcctctgcaatagcaaggggtg 643

                                                                       
Query: 279 gctgttggagttgggagctgtttctctagcccacttttcttgtgtattctcaaggaatga 338
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 642 gctgttggagttgggagctgtttctctagcctgcttttcttgtgtattctcaaggaatga 583

                                                                       
Query: 339 aaatatatcttataatatgagtaaaacaatcaattactaaaaatctccaaaactgataga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 aaatatatcttataatatgagtaaaacaatcaattactaaaaatctccaaaactgataga 523

                                   
Query: 399 actgtcaaaaactgctagactctg 422
           ||||||||||||||||||| ||||
Sbjct: 522 actgtcaaaaactgctagattctg 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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