NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCACTGTACTTAAAAAAAATAGCATTATATATGCATAC
AGACACACACACATAAATATATGTATATGCACACTAATGACAAACAGACT
GAGAAAAAAATCAAGTAAACAATGCCTTTTAAATAACCTCCAAAATATAA
AATACATATATTATATATGAATATATCAGCATCCAGAATATCTAAAGCAA
TCTTGAATAATGAAAACACTGCTGGATATTTTTACTGTCCCAGATTTTAA
GTTGTTCTACAGATCTACAGTAATAAATATAGCACAATGTTGGGAAAAAA
AACAGACATGTTAAACAATGCAATAAAAACTAAAACCTGGATATAAGTTC
CTACCCAAATGGAAACATGATTTTGACAAAGAAATCAGAAATGCACAATT
GAATCTTCAACAACTGGGGTTGGTCAAATTGCATGTGTTCATTTAGAAGA
CTGGGAATACATCCACAATTACCACCATGCACAAAACTCAACTCCAAATG
GATCAAAGTCTTCGACATAACACTCAATACTCTGAAATTGATAGAAGAAA
ATGAANAATATGGTCTTAACTTCATCACCACAGGAAGACTTTCNAACTAT
AACCCCCGTGATTGCTCATGTCCTGATAGCAATTATTATAAGAGACCTCN
TGGAAAAAAACCTTAACTATGCTAAAGCATATCTTCATTTGTCN

NNGGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTAGGGCTTTACA
GAAAAACCCTGTCTCAAAAAACCAAAATAAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATTTAGAATGACATTAATGAAATGCAGTAAA
ACTCTTTTATATAGATCTTGTTTAAGTCTTATGCTGACAAACTATATTTT
GTGGGCTTCAACAACTAACTTAGCTAGTCTATGTACAAATTTGTATGGTA
AATATTAGTACAATTTATTGAATGGTAATAAAATTCTTTACACATCTGAA
TTTTAGATATAATTTAATAAGTGCTCTGGATAACTTTATGATAAAAATCC
ACATTGTAAAACACTGTAATTCTCTTTTTAAAAAGATATTTATTTATTAT
ATATAATAATCTGTAGCTGTCTTCAGACACACCAGAAGAGGGTATCAGAT
CACATTGAGGATGGTTGTAAGCCACCATGTGGTTGCTGGGATTTGAACTC
ATGAAGGGCAGCCAGTGTTCTTAACCTCTAAGCCATCTTTCTAGCCCAAC
ACTGTAATTCTTAAAAGGCATTGGAAATGTAAATGAAATGAATACTAATT
TAAAAAAAGGCTCTCTACTAGGNATTTTCGCTTGGCTACATGTCTCACTA
AAACAGCTTAAGGAAGGAATGGATTTGTTTTGGGTTGCCCTTGGATGAAA
AAACCCCCGGG

Query= MSMg01no354_f11.g1 MSMg01no354_f11.g1 CHROMAT_FILE:
MSMg01no354_f11.g1 PHD_FILE: MSMg01no354_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:28 2005
         (483 letters)



>mm_chr3_76030655_76031537
          Length = 883

 Score =  872 bits (451), Expect = 0.0
 Identities = 472/489 (96%), Gaps = 17/489 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagctagggctttacagaaaaaccctgtctcaaaaaaccaaaataaataataata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 caggacagctagggctttacagaaaaaccctgtctcaaaaaaccaaaataaataataata 254

                                                                       
Query: 61  ataataataataataataataataataataat------ttagaatgacattaatgaaatg 114
           ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||
Sbjct: 255 ataataataataataataataataataataataataatttagaatgacattaatgaaatg 314

                                                                       
Query: 115 cagtaaaactcttttatatagatcttgtttaagtcttatgctgacaaactatattttgtg 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagtaaaactcttttatatagatcttgtttaagtcttatgctgacaaactatattttgtg 374

                                                                       
Query: 175 ggcttcaacaactaacttagctagtctatgtacaaatttgtatggtaaatattagtacaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggcttcaacaactaacttagctagtctatgtacaaatttgtatggtaaatattagtacaa 434

                                                                       
Query: 235 tttattgaatggtaataaaattctttacacatctgaattttagatataatttaataagtg 294
           |||||||||||||||||||||||||||||           ||||||||||||||||||||
Sbjct: 435 tttattgaatggtaataaaattctttaca-----------tagatataatttaataagtg 483

                                                                       
Query: 295 ctctggataactttatgataaaaatccacattgtaaaacactgtaattctctttttaaaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctctggataactttatgataaaaatccacattgtaaaacactgtaattctctttttaaaa 543

                                                                       
Query: 355 agatatttatttattatatataataatctgtagctgtcttcagacacaccagaagagggt 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agatatttatttattatatataataatctgtagctgtcttcagacacaccagaagagggt 603

                                                                       
Query: 415 atcagatcacattgaggatggttgtaagccaccatgtggttgctgggatttgaactcatg 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atcagatcacattgaggatggttgtaagccaccatgtggttgctgggatttgaactcatg 663

                    
Query: 475 aagggcagc 483
           |||||||||
Sbjct: 664 aagggcagc 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)