Query= MSMg01no354_k10.b1 MSMg01no354_k10.b1 CHROMAT_FILE:
MSMg01no354_k10.b1 PHD_FILE: MSMg01no354_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:52 2005
(578 letters)
>mm_chr3_106682379_106683356
Length = 978
Score = 1073 bits (555), Expect = 0.0
Identities = 572/581 (98%), Gaps = 8/581 (1%)
Strand = Plus / Minus
Query: 1 aattaattagtaactgtgtagtgtagtacagtgtgtgaaataccacctttaaatgggtta 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aattaattagtaact-----gtgtagtacagtgtgtgaaataccacctttaaatgggtta 788
Query: 61 tacatagcttttaaaagaatgtttctaaaattttctattacaccaccagatggtgataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tacatagcttttaaaagaatgtttctaaaattttctattacaccaccagatggtgataga 728
Query: 121 gagtcaaagttatattatttgtatgtaa-tttttttttaaaagtgggtaagttaatcatt 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 727 gagtcaaagttatattatttgtatgtaattttttttttaaaagtgggtaagttaatcatt 668
Query: 180 tcaaagaaaatgaactatttcttgtgtgtactacctagataacagtttatttagttatat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tcaaagaaaatgaactatttcttgtgtgtactacctagataacagtttatttagttatat 608
Query: 240 tattaaatatattactaagtcagtgaaggaaaatattactaccatattggagatgaagac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tattaaatatattactaagtcagtgaaggaaaatattactaccatattggagatgaagac 548
Query: 300 actgaaactaagatatcttatacttgacatctttagagttaaagatttcctaggaatttc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 actgaaactaagatatcttatacttgacatctttagagttaaagatttcctaggaatttc 488
Query: 360 cttgaaaactttcagacatatttttttcctaaaatatttgtaattttatttttattttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cttgaaaactttcagacatatttttttcctaaaatatttgtaattttatttttattttta 428
Query: 420 --ttttttttactatctgaggcatatatttatccatataacccggaagccttgttagtaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttttttttttactatctgaggcatatatttatccatataacccggaagccttgttagtaa 368
Query: 478 tttgctcatgaaaaaggaaagtataagtccacaccaaaatacaaatatttatagaaactt 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgctcatgaaaaaggaaagtataagtccacaccaaaatacaaatatttatagaaactt 308
Query: 538 tattcataatactccagacaactgatatgcctatcaactta 578
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 307 tattcataatactccagacaactgaaatgcctatcaactta 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_k10.g1 MSMg01no354_k10.g1 CHROMAT_FILE:
MSMg01no354_k10.g1 PHD_FILE: MSMg01no354_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:52 2005
(434 letters)
>mm_chr3_106519013_106519846
Length = 834
Score = 808 bits (418), Expect = 0.0
Identities = 430/434 (99%)
Strand = Plus / Plus
Query: 1 tcttatcttcatgagataggattttagttcagtatcctggttttcaggtgtgttggtgta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttatcttcatgagataggattttagttcagtatcctggttttcaggtgtgttggtgta 260
Query: 61 tccagagcttgctgaggtgggagaactgagttctgatcgtgccagaatatattggcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccagagcttgctgaggtgggagaactgagttctgatcgtgccagaatatattggcttct 320
Query: 121 cttgtttatggtcctgtgcttgcctcttcccatctggttatctctgctaactggcctgtg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 cttgtttatggtcctgtgcttgcctcttcccatctggttatctctgctaactggcctgcg 380
Query: 181 tgactctgtctgaagcctgcctctggtgtacttaaattactgcaggtatccttggaggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactctgtctgaagcctgcctctggtgtacttaaattactgcaggtatccttggaggct 440
Query: 241 ttcttactctgggatcttaagaggcacagactcactgatgatcttccaggtggaaggcac 300
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 ttcagactctgggatcttaagaggcacagactcactgatgatcttgcaggtggaaggcac 500
Query: 301 tggcagagtttgtgcaggggtgcagatggggtggagataagtcctgagtatgctaggctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcagagtttgtgcaggggtgcagatggggtggagataagtcctgagtatgctaggctc 560
Query: 361 ctcagggttgccatcttctgtggttatttgggggagccccttactgtggccctggcttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcagggttgccatcttctgtggttatttgggggagccccttactgtggccctggcttta 620
Query: 421 tcatatctcttggg 434
||||||||||||||
Sbjct: 621 tcatatctcttggg 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
