BAC Information

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BAC

Clone NameMSMg01-354K11
Chromosome3 (Build37)
Map Location 134,535,022 - 134,705,762
singlet/doubletdoublet
Overlap geneTacr3, LOC229837
Upstream geneLOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
Downstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354K11.T7 (MSMg01no354_k11.b1)MSMg01-354K11.TJ (MSMg01no354_k11.g1)
ACCAG465230AG465231
length747764
length of high quality
(start - end)		677 (46 - 722)501 (76 - 576)
definitionCHROMAT_FILE: MSMg01no354_k11.b1 PHD_FILE: MSMg01no354_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:52 2005CHROMAT_FILE: MSMg01no354_k11.g1 PHD_FILE: MSMg01no354_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,535,022 - 134,535,691)(134,705,262 - 134,705,762)
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCTCCTGATGCTAAACCAAGATAGGCATTAGAATCAGTCAGGAT
AGCTTACTATCATAGAGGAAGAAGATTGTTTGCATGTATCGGTTTGTTTT
ATATATTATATATAGTAAAATATTTAAGGCACATTTAAAATATTAGATAA
ATCATAAATTATAAGTAAGTTGACTTTTATGACATATATAGACAAAACCA
GAGAATATGGGCCAAAGCACAATGAAGTAGATAGGTCAGCTAAAAGAGTA
GAAGATATAGAAGATATTGCTATCTCTTATAATATAAATGTGTTATATGT
CATTTTAAGTATTGGCTAAAACATAAAAGATTCTACATATTTAGAAGATT
AAACTGTAAACCCAGAAGTGGACTAGAATAGTAGGGCATAAAGAATCATC
ATTGCTTCAATTTTCTTATTACTTTCTAATTTTAGAGTAAGCACAGATTC
TGATAGAGAGGATGAGGACTTTGAGACTCACTTGTGTCTTGTCAGTTATT
ATTGTCCCTTTGCCCTGGTATGAGGAATTCAAGGAGTAACATCTTGTACT
TTCAGAAAGAGTTTATAGTTAATAAATTAAATAAATGCTGTCCAAATAGA
GACAATGAATCCTGGCAGGACCCTATCTTCCAGGTTTTTAATATTCTTAA
TCTCTTGATTTGCAGGAATGAGGAAGATACTTATCTCTGTACAAGAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCTCTATCCTATCCCCATTCTAA
AGTCTTAAGCAGCTTTGTTTTGTGGCTTTGAGATGACTTCTCCATCAGCT
TCTAATGGCGTCAAGTTTCCTGTCATTATTTTTATACTGTGATATGCTTT
ACTATTTATCCCTTGATATTAACCCTCTTTATTTTTACAAGTACGATATA
AAGACATTTTCTTTAAAAAAATTTGAGTAGGAATGTTTATTACACAGCTG
TTTCGTTTCTGTTCTTCTGTGTTTAATGACCACTTCATTATTAAGGTTTC
CTGTTAGTTTCCTGATGGCATGCAACACTGCCCTCCTAGCCTAGTGGCCA
TTAGTGCTGTAACCAGAACAGCTGTGGTTTACCCACGAGATACTCTCCAC
ATGATTGGGCCTGTTGCCATTCTTCCATAGCAGGAGTGGGAGAGGAGGGC
CATTAGCACCCCACTCAGGTCTCTGACGACTCCCTTCTGCAGCTGCAGCC
CACCTTCTGACACTGCTCCAGCTGCATGTGGTCTCCAGAGGTGCTAGTGT
ATACAGAGGGTGAAACATTAGCTGAAGGGGGAACTCAAATCTACGCAGCT
ATGAGAAGTTATCATGCTTGCTGGGAAGAAACTATTCACTGCTGCAGCCA
TTTTGGGGAAACTCCTAATCCTGGAAGAAAGCCCCCCACAACTCTTATTT
ATTTGAAAACCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_k11.b1 MSMg01no354_k11.b1 CHROMAT_FILE:
MSMg01no354_k11.b1 PHD_FILE: MSMg01no354_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:52 2005
         (677 letters)



>mm_chr3_134534815_134535891
          Length = 1077

 Score = 1257 bits (650), Expect = 0.0
 Identities = 665/670 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctcctgatgctaaaccaagataggcattagaatcagtcaggatagcttactatca 67
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 gaattctcctgatgctaaaccaagataggcgttagaatcagtcaggatagcttactatca 267

                                                                       
Query: 68  tagaggaagaagattgtttgcatgtatcggtttgttttatatattatatatagtaaaata 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagaggaagaagattgtttgcatgtatcggtttgttttatatattatatatagtaaaata 327

                                                                       
Query: 128 tttaaggcacatttaaaatattagataaatcataaattataagtaagttgacttttatga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tttaaggcacatttaaaatattagataaatcataaattataagtaagttgacttttatga 387

                                                                       
Query: 188 catatatagacaaaaccagagaatatgggccaaagcacaatgaagtagataggtcagcta 247
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 388 catatatagacaaaaccagagaatatgggccaaagcacaatgaagtagataggtgagcta 447

                                                                       
Query: 248 aaagagtagaagatatagaagatattgctatctcttataatataaatgtgttatatgtca 307
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 448 aaagagtagaagatatagaagatattgctacctcttataatataaatgtgttatatgtca 507

                                                                       
Query: 308 ttttaagtattggctaaaacataaaagattctacatatttagaagattaaactgtaaacc 367
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttttgagtattggctaaaacataaaagattctacatatttagaagattaaactgtaaacc 567

                                                                       
Query: 368 cagaagtggactagaatagtagggcataaagaatcatcattgcttcaattttcttattac 427
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cagaagtggattagaatagtagggcataaagaatcatcattgcttcaattttcttattac 627

                                                                       
Query: 428 tttctaattttagagtaagcacagattctgatagagaggatgaggactttgagactcact 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tttctaattttagagtaagcacagattctgatagagaggatgaggactttgagactcact 687

                                                                       
Query: 488 tgtgtcttgtcagttattattgtccctttgccctggtatgaggaattcaaggagtaacat 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgtgtcttgtcagttattattgtccctttgccctggtatgaggaattcaaggagtaacat 747

                                                                       
Query: 548 cttgtactttcagaaagagtttatagttaataaattaaataaatgctgtccaaatagaga 607
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cttgtactttcagaaagagtttatagttaataaattaaataaatgctgtccaaatagaga 807

                                                                       
Query: 608 caatgaatcctggcaggaccctatcttccaggtttttaatattcttaatctcttgatttg 667
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 caatgaatcctggcaggaccctatcttccaggtttttaatattcttaatctcttgatttg 867

                     
Query: 668 caggaatgag 677
           ||||||||||
Sbjct: 868 caggaatgag 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_k11.g1 MSMg01no354_k11.g1 CHROMAT_FILE:
MSMg01no354_k11.g1 PHD_FILE: MSMg01no354_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:52 2005
         (501 letters)



>mm_chr3_134705062_134705962
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctctatcctatccccattctaaagtcttaagcagctttgttttgtggctttgagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 ttcctctatcctatccccattctaaagtcttaagcagctttgttttgtggctttgagatg 642

                                                                       
Query: 61  acttctccatcagcttctaatggcgtcaagtttcctgtcattatttttatactgtgatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acttctccatcagcttctaatggcgtcaagtttcctgtcattatttttatactgtgatat 582

                                                                       
Query: 121 gctttactatttatcccttgatattaaccctctttatttttacaagtacgatataaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gctttactatttatcccttgatattaaccctctttatttttacaagtacgatataaagac 522

                                                                       
Query: 181 attttctttaaaaaaatttgagtaggaatgtttattacacagctgtttcgtttctgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 attttctttaaaaaaatttgagtaggaatgtttattacacagctgtttcgtttctgttct 462

                                                                       
Query: 241 tctgtgtttaatgaccacttcattattaaggtttcctgttagtttcctgatggcatgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tctgtgtttaatgaccacttcattattaaggtttcctgttagtttcctgatggcatgcaa 402

                                                                       
Query: 301 cactgccctcctagcctagtggccattagtgctgtaaccagaacagctgtggtttaccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cactgccctcctagcctagtggccattagtgctgtaaccagaacagctgtggtttaccca 342

                                                                       
Query: 361 cgagatactctccacatgattgggcctgttgccattcttccatagcaggagtgggagagg 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 341 cgagatactctccacatgattgggcctgttgacattcttccatagcaggagtgggagagg 282

                                                                       
Query: 421 agggccattagcaccccactcaggtctctgacgactcccttctgcagctgcagcccacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agggccattagcaccccactcaggtctctgacgactcccttctgcagctgcagcccacct 222

                                
Query: 481 tctgacactgctccagctgca 501
           |||||||||||||||||||||
Sbjct: 221 tctgacactgctccagctgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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