Query= MSMg01no354_m11.b1 MSMg01no354_m11.b1 CHROMAT_FILE:
MSMg01no354_m11.b1 PHD_FILE: MSMg01no354_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:02 2005
(455 letters)
>mm_chr3_119293999_119294854
Length = 856
Score = 843 bits (436), Expect = 0.0
Identities = 451/456 (98%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 1 gatgccgacttttaatacctttggaaaacaagagcatgactgtgtgctagcaattcgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gatgccgacttttaatacctttggaaaacaagagcatgactgtgtgctagcaattcgggc 518
Query: 61 tgttaattcagatcaccgttcccattgaatagagagaagatgatatctttctgtatctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tgttaattcagatcaccgttcccattgaatagagagaagatgatatctttctgtatctta 458
Query: 121 actggcaaccttataatctgtcatagctctgggagagcaaaaaaaa-atttttttttctg 179
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 457 actggcaaccttataatctctcatagctctgggagagcaaaaaaaatttttttttttctg 398
Query: 180 agaaaaatcttctgtcatttttcctctagacttctggcaaaatcatatataaaagagatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agaaaaatcttctgtcatttttcctctagacttctggcaaaatcatatataaaagagatg 338
Query: 240 acatgaatactgcttactgctcggtctttttgccttaattggaaatgctgtttcataaga 299
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acatgaagacagcttactgctcggtctttttgccttaattggaaatgctgtttcataaga 278
Query: 300 agctctgttttattttcatgtactccaagcatagacatcatagtttgattaaactaagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agctctgttttattttcatgtactccaagcatagacatcatagtttgattaaactaagaa 218
Query: 360 aactctttgttagtgagtgttgtaatttcatcctgttactgtgataaaaacactctgacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 aactctttgttagtgagtgttgtaatttcatcctgttactgtgataaaaacactctgacc 158
Query: 420 aacaggcaacttagagagagggaagagtttctttca 455
||||||||||||||||||||||||||||||||||||
Sbjct: 157 aacaggcaacttagagagagggaagagtttctttca 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 856
Length adjustment: 10
Effective length of query: 445
Effective length of database: 846
Effective search space: 376470
Effective search space used: 376470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no354_m11.g1 MSMg01no354_m11.g1 CHROMAT_FILE:
MSMg01no354_m11.g1 PHD_FILE: MSMg01no354_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:02 2005
(572 letters)
>mm_chr3_119122066_119123037
Length = 972
Score = 1098 bits (568), Expect = 0.0
Identities = 571/572 (99%)
Strand = Plus / Plus
Query: 1 ttattctccttatgaagctgggaatgtatctctaccgtctttgagtttctgggtaggaaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattctctttatgaagctgggaatgtatctctaccgtctttgagtttctgggtaggaaa 260
Query: 61 atgaatggtttaggggcactagtgatgttttcatcacgtcttcctgctgcttggaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatggtttaggggcactagtgatgttttcatcacgtcttcctgctgcttggaggagg 320
Query: 121 agatagacggcatctcataagactggcaaggcagtgttggcaggagaccagtcagcctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatagacggcatctcataagactggcaaggcagtgttggcaggagaccagtcagcctga 380
Query: 181 tcgagtgctttattatttcaattgaattgtgaaaggaaggagaaaagcagttggataaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgagtgctttattatttcaattgaattgtgaaaggaaggagaaaagcagttggataaaa 440
Query: 241 ctgtaagaccatattagatacttgcagagcacaaaggggcctgcacagaaagaaaaataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaagaccatattagatacttgcagagcacaaaggggcctgcacagaaagaaaaataa 500
Query: 301 gggagacttgcccagcaatttcaagaagaatccagagaagcaggctggggcagccttcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggagacttgcccagcaatttcaagaagaatccagagaagcaggctggggcagccttcat 560
Query: 361 attctcagttgtctatggaccaataaatagcagttgaaaatctatcatgttgaactttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attctcagttgtctatggaccaataaatagcagttgaaaatctatcatgttgaactttaa 620
Query: 421 aagctgagcagaatttggttataaaaataatctcttaagtcatgtggggatttattgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagctgagcagaatttggttataaaaataatctcttaagtcatgtggggatttattgatg 680
Query: 481 tgtggtccctgacttgaagagaatacagcaatagaaaaagaaaccatgttgcttagaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtggtccctgacttgaagagaatacagcaatagaaaaagaaaccatgttgcttagaatg 740
Query: 541 aagaggccccgccagcagacagagggaaggag 572
||||||||||||||||||||||||||||||||
Sbjct: 741 aagaggccccgccagcagacagagggaaggag 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
