BAC Information

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BAC

Clone NameMSMg01-355B17
Chromosome3 (Build37)
Map Location 63,414,430 - 63,414,794
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676984, LOC666967, Mme
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355B17.T7 (MSMg01no355_b17.b1)MSMg01-355B17.TJ (MSMg01no355_b17.g1)
ACCAG465574AG465575
length747771
length of high quality
(start - end)		504 (47 - 550)493 (79 - 571)
definitionCHROMAT_FILE: MSMg01no355_b17.b1 PHD_FILE: MSMg01no355_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:28 2005CHROMAT_FILE: MSMg01no355_b17.g1 PHD_FILE: MSMg01no355_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGATCCTGCTGCTCAGGGAAGCAGGAGCATGTTCAGTTCTAA
GGAGGTCAAAGCTAAATTCTTATTTAAAAAAACAGTCACCCAATTATTCT
GGTGGAGAACATGGAATGATAAAGACTGTGCTTTGATCTTTGGAAGCATA
CTTAATAGACCCCTGGAGGGGTTGTTAAAACCCAGGCAGCTGGGGCTCCA
GTCATAGAGTTTCTGATTCACTGGGTGTGAGGTGAGGCATGGGGCATTAC
ATTTCTTTTATTATTATTATACTATATTATATTGTATCGTACTATAATCA
TATGTGTGTGGTGTATATGTGTGATGTATACATACTTGTATGTGTGTGTG
TGTGAGTGTGTGTGTGCANCTATGCACACCCATGTGTGGAAGCCAGAGGA
GATGCTGGTACTCTTGCTTTGATATTCTCCACCTAAATTCCTTGAGACCC
AGTTCCTGTAACTGAACCTGGAGCTAGGCCAGCAGGCAGCAGGCCTCAGT
GATCCTGGTGTCGTCCCGTAACACTGGTGCCTCGGGGCTGTGCTTCACTT
TTCACGTGGGTGATGGAAATATGCACCCAGGGCCTCATGCCTTTTTTTCA
CGAATTCCTAACCACTGCGATGTCTTTTATTCCGGCCTCTGAATTCGCAT
TTCCTTTTCCTTTACTCGGTCTCCTTTTTCTCTTCCCTCATATTTGC

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCAAACAGAACATGAAAA
AAATCATCCTAAGTGAGGTAACTCTCAGTCACAAAAGTACACACATGGTA
TGTATTCATTGGTAAGTGGATATTAGCCCAGAAGCTCAGAATACCCAAGA
TACAATTCACAGACCATAGGAAGCTCAAGAAGAAGGAAGACCAAAGTGTG
GGTGATTCACTCCTTCTTAGAAGGGGGAACAAAATACTCATGGGAGAAAA
TACAGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCATCCAGAGAC
TTCCTCACATAGGGATCCATCCCATTTGCAGACATGAAACCCAGACACTA
CTGCAGATGCCAAGAAGTGCTTGCTGACAGGATCCTGATATATCTGTCTC
CTAGGAGGCTCTGCCACAGCCTGACAAACACAGAAGTGGATGCTCTCAGC
CAACCATTAGACTGAGCACAGGGTCCTCATTAGAGGAGTGAGAGAAAGGA
CTGAAGGAGCTGAAGGAGTTTGTAACCTCATAGGAAGAACAGCAATATCA
ATCAACCAGAACCCCTCAGAGCTTCCAGGGACTAAACCACCAGCCCAAGA
GTAAACATCAAGGGACCCATGGGTCCGGCCTCCTATGTAGTATAGGAAGG
GCCTGGTGGGTTTCAATGCGGAGAAGAGGGCCCTTGGTCCCGGGAAGGTT
CAATGCTTCCTTAAACAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_b17.b1 MSMg01no355_b17.b1 CHROMAT_FILE:
MSMg01no355_b17.b1 PHD_FILE: MSMg01no355_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:28 2005
         (504 letters)



>mm_chr3_63414430_63415333
          Length = 904

 Score =  706 bits (365), Expect = 0.0
 Identities = 365/365 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtgatcctgctgctcagggaagcaggagcatgttcagttctaaggaggtcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaattcagtgatcctgctgctcagggaagcaggagcatgttcagttctaaggaggtcaa 306

                                                                       
Query: 64  agctaaattcttatttaaaaaaacagtcacccaattattctggtggagaacatggaatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agctaaattcttatttaaaaaaacagtcacccaattattctggtggagaacatggaatga 246

                                                                       
Query: 124 taaagactgtgctttgatctttggaagcatacttaatagacccctggaggggttgttaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taaagactgtgctttgatctttggaagcatacttaatagacccctggaggggttgttaaa 186

                                                                       
Query: 184 acccaggcagctggggctccagtcatagagtttctgattcactgggtgtgaggtgaggca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acccaggcagctggggctccagtcatagagtttctgattcactgggtgtgaggtgaggca 126

                                                                       
Query: 244 tggggcattacatttcttttattattattatactatattatattgtatcgtactataatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tggggcattacatttcttttattattattatactatattatattgtatcgtactataatc 66

                                                                       
Query: 304 atatgtgtgtggtgtatatgtgtgatgtatacatacttgtatgtgtgtgtgtgtgagtgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  atatgtgtgtggtgtatatgtgtgatgtatacatacttgtatgtgtgtgtgtgtgagtgt 6

                
Query: 364 gtgtg 368
           |||||
Sbjct: 5   gtgtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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