NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATATAATTATGCTCCAACAACTCAGAGAAGACTAAAAACAA
AGGGCTGTAAATAAAGAAGACAAGCCAAGAGATGGAATTGCTAAAGAACA
ATCAAACAGAAATAATGCCAGAAACCAAAACCCTGTAAGTAAAAAAACCT
CAGTGGAAAGCCTTGCAAACAGAATTATTTGAAAACAGAGACTCGGATAA
AAGGCAAGGTATAGCAAGGTGATCATTCTGTAAAGAAGAGGTTTAAAAAT
AGATGTATGGTCAGAACAGGGGAGAGTTTTGAGAAACATGGAAAGATATA
AACTTTAAATTATAGACATAGAAGGAAAAGAATGCCAAAGGGTTCAAAAG
AGATCACAGAAATAGACAAAGCAAAACGAAACCTAAATTTATAAAAAGAG
ATGCTTATCATGATACTAGAGACTCACAGAACAACAATTAGACAGGATGA
GAACAAATGTATCCTAACATGTTAGAGATAAAATATTAGAAACATTAGAA
AAGGTTATGGAGGGTCTGACGAGATGGCTCAGCAGTTAAGAGCACTGGGT
ACTTTTCCATAAGACTCTGTTTCAACTTCTCTCAAATACATGGCCACTCA
CAAACATCTCTAACTCAAGTTCTAAAGGACTGCTCATCCCCCTCTGACCT
CTACATGGTACCAGGCATGTACCCCGTGCATAGACACACCTAN

NNNCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTC
TGGAAATCCGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACTGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACACATTCACAAAGGAACTCACCCCAAATGGACTCCCT
TGATAGTTGGATATTAACCCCAAACCCTAGGATACCCCAGATATAAGAAC
CATTTTCCTAACCCCCTGGAACTTCCCAAAAAATTAAGACTGGAGTG

Query= MSMg01no355_c17.b1 MSMg01no355_c17.b1 CHROMAT_FILE:
MSMg01no355_c17.b1 PHD_FILE: MSMg01no355_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:33 2005
         (589 letters)



>mm_chr3_110081391_110082378
          Length = 988

 Score = 1093 bits (565), Expect = 0.0
 Identities = 580/585 (99%), Gaps = 1/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatataattatgctccaacaactcagagaagactaaaaacaaagggctgtaaat 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatataaatatgctccaacaactcagagaagactaaaaacaaagggctgtaaat 264

                                                                       
Query: 65  aaagaagacaagccaagagatggaattgctaaagaacaatcaaacagaaataatgccaga 124
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 265 aaagaagacaagccaagagatggacttgctgaagaacaatcaaacagaaataatgccaga 324

                                                                       
Query: 125 aaccaaaaccctgtaagtaaaaaaacctcagtggaaagccttgcaaacagaattatttga 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aaccaaaaccctgtaagtaaaaaaacctcagtggaaagccttgcaaac-gaattatttga 383

                                                                       
Query: 185 aaacagagactcggataaaaggcaaggtatagcaaggtgatcattctgtaaagaagaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaacagagactcggataaaaggcaaggtatagcaaggtgatcattctgtaaagaagaggt 443

                                                                       
Query: 245 ttaaaaatagatgtatggtcagaacaggggagagttttgagaaacatggaaagatataaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaaaaatagatgtatggtcagaacaggggagagttttgagaaacatggaaagatataaa 503

                                                                       
Query: 305 ctttaaattatagacatagaaggaaaagaatgccaaagggttcaaaagagatcacagaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttaaattatagacatagaaggaaaagaatgccaaagggttcaaaagagatcacagaaa 563

                                                                       
Query: 365 tagacaaagcaaaacgaaacctaaatttataaaaagagatgcttatcatgatactagaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagacaaagcaaaacgaaacctaaatttataaaaagagatgcttatcatgatactagaga 623

                                                                       
Query: 425 ctcacagaacaacaattagacaggatgagaacaaatgtatcctaacatgttagagataaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcacagaacaacaattagacaggatgagaacaaatgtatcctaacatgttagagataaa 683

                                                                       
Query: 485 atattagaaacattagaaaaggttatggagggtctgacgagatggctcagcagttaagag 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atattagaaacaatagaaaaggttatggagggtctgacgagatggctcagcagttaagag 743

                                                        
Query: 545 cactgggtacttttccataagactctgtttcaacttctctcaaat 589
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cactgggtacttttccataagactctgtttcaacttctctcaaat 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space:   566262
Effective search space used:   566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)