Query= MSMg01no355_f17.b1 MSMg01no355_f17.b1 CHROMAT_FILE:
MSMg01no355_f17.b1 PHD_FILE: MSMg01no355_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:47 2005
(578 letters)
>mm_chr3_54494022_54494999
Length = 978
Score = 1056 bits (546), Expect = 0.0
Identities = 567/574 (98%), Gaps = 2/574 (0%)
Strand = Plus / Minus
Query: 5 gaattcaaggtgttcttctcagtgtgaagtgaaggctaggagagaggagtcacagtacta 64
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gaattcaaggcattcttctcagtgtgaagtgaaggctaggagagaggagtcacagtacta 718
Query: 65 ccagcatgtataagggcttagactggattgaagactgcctggaggccttggtgatgggtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ccagcatgtataagggcttagactggattgaagactgcctggaggccttggtgatgggtg 658
Query: 125 ttggcagctttccccctctcgtaggcagggtcctgccagccaaggcctatggactgtcac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttggcagctttccccctctcgtaggcagggtcctgccagccaaggcctatggactgtcac 598
Query: 185 cagggcctgagatagtccagaaactagg-acgtggcttccagtccataagtatgtggtca 243
||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 597 cagggcctgagatagtccagaaact-ggcacgtggcttccagtccgtaagtatgtggtca 539
Query: 244 gatgttctagacactgagatgtaaagcacttgatttgccctcctagaatgtgccttgcta 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 538 gatgttctagacactgagatgtaaagcacttggtttgccctcctagaatgtgccttgcta 479
Query: 304 aggttgagcttgaggtagtctgaactccctgtaattctactgcctgatgctctctatttg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aggttgagcttgaggtagtctgaactccctgtaattctactgcctgatgctctctatttg 419
Query: 364 acttgttttgtctccccacttaaagaggtctgcagttaataagcgtaacggcctgggtca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 acttgttttgtctccccacttaaagaggtctgcagttaataagcgtaacggcctgggtca 359
Query: 424 tcagcccttgcatccctcctgagcccagcttttgactctttcctttttttgttatctctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tcagcccttgcatccctcctgagcccagcttttgactctttcctttttttgttatctctt 299
Query: 484 cattctctttcatccatggtctcccttgggaccctgtccagaaccttgatgaagctggtt 543
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 cattctctttcatccctggtctcccttgggaccctgtccagaaccttgatgaagctggtt 239
Query: 544 caggccttgtgtggataccgggtgagctgaccac 577
||||||||||||||||||||||||||||||||||
Sbjct: 238 caggccttgtgtggataccgggtgagctgaccac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_f17.g1 MSMg01no355_f17.g1 CHROMAT_FILE:
MSMg01no355_f17.g1 PHD_FILE: MSMg01no355_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:47 2005
(451 letters)
>mm_chr3_54339435_54340285
Length = 851
Score = 857 bits (443), Expect = 0.0
Identities = 449/451 (99%)
Strand = Plus / Plus
Query: 1 tttacgtttacaaagacacctgtatctagagtaaaaggctccatgctgcattccaaacct 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tttacgtttacaaagacacctgtatctagagtaaaaggctccatgttgcattccaaacct 260
Query: 61 ggttaaaaatccctaatgtgctcagtggagaaactggagaaaatcctaccctgtgggttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttaaaaatccctaatgtgctcagtggagaaactggagaaaatcctaccctgtgggttt 320
Query: 121 aggatttaagttatgctgagaggtggccagttttgtcctgagtccttcaaaaagtcagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatttaagttatgctgagaggtggccagttttgtcctgagtccttcaaaaagtcagca 380
Query: 181 gctaggaacctgagtatgtccccacaacttgtctcccacctgagatcagtggagaagacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctaggaacctgagtatgtccccacaacttgtctcccacctgagatcagtggagaagacc 440
Query: 241 cataggggttacaaagagccccagaggagaaagcagcaacttgaaagccatttaaccaga 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaggggttacaaagagccccagaggagaaagcagcaacttgaaagccatttaaccaga 500
Query: 301 aaatgcttgtttgaaaggtatgccttgtacagatgattgggttggctaccctgcagacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgcttgtttgaaaggtatgccttgtacagatgattgggttggctaccctgcagacat 560
Query: 361 gtctgcaacctaattctttcttgggacttcttatcagctccaagatggctgagttagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctgcaacctaattctttcttgggacttcttatcagctccaagatggctgagttagtga 620
Query: 421 ggttttacataaggctagcagcatctcttca 451
|||||||||||||||||||||||||||||||
Sbjct: 621 ggttttacataaggctagcagcatctcttca 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
