BAC Information

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BAC

Clone NameMSMg01-355H01
Chromosome3 (Build37)
Map Location 134,866,420 - 134,866,924
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290
Downstream geneEG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355H01.T7 (MSMg01no355_h01.b1)MSMg01-355H01.TJ (MSMg01no355_h01.g1)
ACCAG465828AG465829
length756891
length of high quality
(start - end)		517 (45 - 561)---
definitionCHROMAT_FILE: MSMg01no355_h01.b1 PHD_FILE: MSMg01no355_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:53 2005CHROMAT_FILE: MSMg01no355_h01.g1 PHD_FILE: MSMg01no355_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTTTTCTTTTGTTTTGTTTTTTCAGCAAAGACTTATTTATTTAT
TTGCTCATTAAATCAACAATGTTCAGCTTTCATGCAGCATCTGTGGTTTC
TCTTTTGATATTTTTATATAAATTTTTATATGTATGTGTTGGCGAGGGCA
TACATGTACATATGTGTGCTTGTATGTATGAACAACCTTGACTGTGACAT
CTCAGGGACTATCCTCCTTGGTTTTTTGAGACAGAGTTTCTCACTAGGAC
ACAGGGCTCACTCATTTGATCAGGCTGGCTGGCCAGCAAGCCCCCAGGGA
TCTTCCTGTCTCTGTGTCCTCGGTATTGGGTTTACAAGTGCACAACACCT
TCCTTACCTGGCTTTTTTACATGGGATCTGGGGCTCACACTCAGATGGCA
AGCACTTTACAGACTGAGACATTTCCCTGTCTTCACAGCTTCTCTTTGGC
ACCTATGAGTTGTCAGCATACACTCTTACACACCATGATTAGGATTAATA
AAATGAAGCATCCTTTACACACTGTGGTAACCATCTTGAGTAATCTGACA
ACCAAAACAGCTACTAAATGGCTTACTGGAAGATAGCATCTATAGGGTAT
ATTCCCCGGAATAGATGGACCGCTCACCCTCTTGTTAGCACAGAACTAGT
AACGAGATGCTCCTCATGTTTCTCTGGACATGTATCTCTTTACCACTTAC
TTATTG

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACTCAGAAGGGGAAATAAAACAGTCA
TCATAGATGGATGGATGGTAGCCAACTGGGTAGGAGAGGGGAAAGCAACC
CTCCTCTTCTTTCCCCCCCTTTCTCCCTCCCCCTCCTTCTCCCCTCCCCC
TCTCTTCCCCTCCCCCCCCTCTCCCCCTTTTCTTTCCTTCTCTCCCCTCT
TCCTTTTCCCCTTTTTCCCCTTCCTCCCTCTCCCTTTCCTCTCTTCCCCC
CCTTCCCCCCTTTCCCCTCCCCTCCCCTCCTCCTTTTTCCTCCCTTCTCC
TCTTCCCTCCCCTCTCCCTCTCCTTTTCTTTTCTCCCCCCTTCCCCCCCT
CTTCCCTTCTCTCCCCCTTTTCTCCCCCTCTTCTTTTCTTTCCCTCTTTT
TTTCCCCTCTTCCCTCCCCTCTTCTCTTTCCCCTCCCCCCCCCTCTCCTC
TCCCCCTTTTCCCCTTCTCCCTTCCCCCCCCCCTCCTCTCTTCCTCTTCT
CCCCCTTTTCCCTCTTCCCCCCCCCCTTCCCTCCTCTCCCCCCCCTCTTC
CCCCCCTTCCCCTTTCTTCTTCTCCTTTCCCCTTTCCTTTTTTTTTCTCC
TTTTTCCCCCTCCCTCTTCTCCCTTCTTTCCTCCTCCCCCCTCTTTTTTT
TTCCTCCCCTCCTCCTTCCCTCCCCTTCCTCCTCTTCTCTCTTCTTTCCC
CCGCTTTTTCTCTCTCTCTCTCCCCCTTTCTTCCTTCTCCTTCCCCTCCT
CCCTTCCTCGCCCTTTCCTCCCTCCCCCCCTCTCTTTTTCTCTTCTCCCC
TTCCTCTCCTCCTCTCCTTTCTTCTCTCCCCCCTCCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_h01.b1 MSMg01no355_h01.b1 CHROMAT_FILE:
MSMg01no355_h01.b1 PHD_FILE: MSMg01no355_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:53 2005
         (517 letters)



>mm_chr3_134866208_134867124
          Length = 917

 Score =  847 bits (438), Expect = 0.0
 Identities = 489/506 (96%), Gaps = 2/506 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  gttttcttttgttttgttttttcagcaaagacttatttatttatttgctcattaaatcaa 72
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gttttgttttgttttgttttttcagcaaagacttatttatttatttgctcattaaatcaa 272

                                                                       
Query: 73  caatgttcagctttcatgcagcatctgtggtttctcttttgatatttttatataaatttt 132
           ||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 273 caatgttcagctttcattcagcatctgtggtttctctttttatattttaatataaatttt 332

                                                                       
Query: 133 tatatgtatgtgttggcgagggcatacatgtacatatgtgtgcttgtatgtatgaacaac 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tatatgtatgtgttggcgagggcatacatgtacatatgtgtgcttgtatgtatgaacaac 392

                                                                       
Query: 193 cttgactgtgacatctcagggactatcctccttggttttttgagacagagtttctcacta 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttgactgtgacatctcagggactatcctccttggttttttgagacagagtttctcacta 452

                                                                       
Query: 253 ggacacagg-gctcactcatttgatcaggctggctggccagcaagcccccagggatcttc 311
           |||||| || ||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 453 ggacac-ggagctcactcatttgatcaggttggctggccagcaatcccccggggatcttc 511

                                                                       
Query: 312 ctgtctctgtgtcctcggtattgggtttacaagtgcacaacaccttccttacctggcttt 371
           ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 512 ctgtctctgtgtcctcgatattgggcttacaggtgcacaacaccttccttacctggcttt 571

                                                                       
Query: 372 tttacatgggatctggggctcacactcagatggcaagcactttacagactgagacatttc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 572 tttacatgggatctggggctcacactcagatggcaagcactttacagactgagacatttt 631

                                                                       
Query: 432 cctgtcttcacagcttctctttggcacctatgagttgtcagcatacactcttacacacca 491
           ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 632 cctgtcttcacggtttctctttggcacctatgagttgtcagcgtacactcttacacacca 691

                                     
Query: 492 tgattaggattaataaaatgaagcat 517
           ||| ||||||||||||||||||||||
Sbjct: 692 tgactaggattaataaaatgaagcat 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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