Query= MSMg01no355_n02.b1 MSMg01no355_n02.b1 CHROMAT_FILE:
MSMg01no355_n02.b1 PHD_FILE: MSMg01no355_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:22 2005
(573 letters)
>mm_chr3_15052953_15053922
Length = 970
Score = 828 bits (428), Expect = 0.0
Identities = 466/480 (97%), Gaps = 3/480 (0%)
Strand = Plus / Minus
Query: 94 tgcacttgataatgtctggcaatggtctagtgcatacatgaagcaaacttgagtggtttt 153
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 970 tgcactagataatgtctgacaatggtctagtgcatacatgaagcaaacttgagtggtttt 911
Query: 154 ctcaaaactacaatcttaaaacttaatgcaacattataacaagtaaataatctgaaagaa 213
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 910 ctcaaaactactatcttaaaacttaatgcaacattataacaagttaataatctgaaagaa 851
Query: 214 acattttcaaacctactatgtagtaccatttcattaatgagaagaaagtcttaaatattt 273
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 aaattttcaaacctactaagtagtaccatttcattaatgagaagaaagtcttaaatattt 791
Query: 274 atgttctgaccataggaaatattgtaaaattgttttcctacataaagaagaggacagtgt 333
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 atgttctgaccataggaaatattgtaaaattgttttcctacataaagaagaggacagtgc 731
Query: 334 ttgcagagctgtaaactgcataaggatttgaggtacttaagcaactgaaacactgcgttg 393
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttgcagagctgtaaactgtataaggatttgaggtacttaagcaactgaaacactgcgttg 671
Query: 394 tctttatgtgctttgttgtattttaccattattaagtttcaataattttattttactgtg 453
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 670 tctttatgtgctttgttgtattttaccattattaagtttc---aattttattttaatgtg 614
Query: 454 atctatttttgataaaacataatcctcataaatcttaacttatttttcctttgcggatta 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 613 atctatttttgataaaacataatcctcataaatcttaacttatttttcctttgcagatta 554
Query: 514 ttttttatatatgtgaatacctgtgtgagtgaaagccatgtgcacgaaggtacacagagt 573
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 553 ttttttatatatgtgaatacctgtgtgagtgaaagccatgtgcacgcaggtacacagagt 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 970
Length adjustment: 10
Effective length of query: 563
Effective length of database: 960
Effective search space: 540480
Effective search space used: 540480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_n02.g1 MSMg01no355_n02.g1 CHROMAT_FILE:
MSMg01no355_n02.g1 PHD_FILE: MSMg01no355_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:22 2005
(541 letters)
>mm_chr3_14871704_14872644
Length = 941
Score = 946 bits (489), Expect = 0.0
Identities = 527/545 (96%), Gaps = 12/545 (2%)
Strand = Plus / Plus
Query: 1 agtgaagaagaaatagatggaaaattagcgatagagaacagtggctcactgagcatatta 60
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaggaagaaatagatggaaaaatagcgatagagaacagtggctcactgagcatatta 260
Query: 61 gactcagaatctcagctctcctactttcaggctgagttacaaatactacagaagtgatgg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactcagaatctcagcactcctactttcaggctgagttacaaatactacagaagtgatgg 320
Query: 121 gcccatgctatgtatccgggtatggaggagtatgcggaccttaccacgcttaagtgaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gcccatgctatgtatccgggtatggaggagtatgcggaccttaccacacttaagtgaaaa 380
Query: 181 cacacgttaacatcattgtagatctcaaaaactgaattcataatgtgttttacctcaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cacacgttaacatcattgtagatctcaaaaactgaattcataatgtgttttacttcaaat 440
Query: 241 aataccagcgataatccatcactcgttaaaaatttgcctactaccaagtttgcctggttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataccagcgataatccatcactcgttaaaaatttgcctactaccaagtttgcctggttt 500
Query: 301 taatcacctataaaacacacccat-aaggccaggtgttttaaaatgtttgatccagcatt 359
|| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 501 tagtcacctataaaacacacccatgaag-ccaggtgttttaaaatgtttgatccagcatt 559
Query: 360 taaatttcttcttcataaagatggttttctttgcccaaagtagagccatttattttttat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taaatttcttcttcataaagatggttttctttgcccaaagtagagccatttattttttat 619
Query: 420 ttcactactttaatctttgcatgcctattaaaaacaaaaacaaacaaacaaaaaaa---c 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 620 ttcactactttaatctttgcatgcctattaaaaacaaaaacaaacaaacaaaaaaaaaac 679
Query: 477 aaaaacagcaacaacaacaacaacaaaaaactgtgtcaggtgtcttttgagttggaggct 536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaaaacagcaacaacaa-------aaaaaactgtgtcaggtgtcttttgagttggaggct 732
Query: 537 gggat 541
|||||
Sbjct: 733 gggat 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space: 494361
Effective search space used: 494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
