Query= MSMg01no355_p13.b1 MSMg01no355_p13.b1 CHROMAT_FILE:
MSMg01no355_p13.b1 PHD_FILE: MSMg01no355_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:34 2005
(525 letters)
>mm_chr3_71918165_71919089
Length = 925
Score = 977 bits (505), Expect = 0.0
Identities = 517/521 (99%)
Strand = Plus / Plus
Query: 5 gaattccatttatacttgatactaatacctttattggcattttctacctcttgatgcatt 64
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattccatttaaacttgatactaatacctttattggcattttctacctcctgatgcatt 264
Query: 65 tcttataagactctctttatcccctttcctaagacttggaaatctgggtttgcaatgaaa 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 tcttataagactctctttatcccctttcctaagacttggaaatctggttttgcaatgaaa 324
Query: 125 tgcttggatatctacagaaggaaagacaagcagtgagggtcagttatcttggtttagaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgcttggatatctacagaaggaaagacaagcagtgagggtcagttatcttggtttagaaa 384
Query: 185 cttcagactctatgaaaacgatatctagtcaatgctgtattgagtaccaaagttaatgtc 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcagactctatgaaaacaatatctagtcaatgctgtattgagtaccaaagttaatgtc 444
Query: 245 acataagtagtgtagtcattcatctgtcagaatcacacctgcagatgtttcacaactgtc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acataagtagtgtagtcattcatctgtcagaatcacacctgcagatgtttcacaactgtc 504
Query: 305 ccataacaagactttgcttactaacaaaagctctcttaccgaagggaagcttaaatttct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccataacaagactttgcttactaacaaaagctctcttaccgaagggaagcttaaatttct 564
Query: 365 gtggctacagtgaaaaacagcagccagtttggtttgattccttctaaatatcaagggcag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtggctacagtgaaaaacagcagccagtttggtttgattccttctaaatatcaagggcag 624
Query: 425 tgaaatacttccaagatacttgtatcctggaagacttttgctaatgttttcttacacaca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgaaatacttccaagatacttgtatcctggaagacttttgctaatgttttcttacacaca 684
Query: 485 aatttgttctttgttacaatcctcctctgacttaccaccac 525
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aatttgttctttgttacaatcctcctctgacttaccaccac 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_p13.g1 MSMg01no355_p13.g1 CHROMAT_FILE:
MSMg01no355_p13.g1 PHD_FILE: MSMg01no355_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:34 2005
(517 letters)
>mm_chr3_72074168_72075084
Length = 917
Score = 837 bits (433), Expect = 0.0
Identities = 482/517 (93%), Gaps = 29/517 (5%)
Strand = Plus / Minus
Query: 1 tataaacatacttttaaaattgtgtttattccttccttcttccttccttttttccctttc 60
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tatacacatacttttaaaattatgtttattccttccttcttccttccttttttccctttc 669
Query: 61 tttccttctttttatcctttctttcactagagatgatccagtgcccacacagctgtaaat 120
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttccttccttttgtcctttctttcactagagatgatccagtgcccacacagctgtaaat 609
Query: 121 ttatctttataggcatgcattttattaggtgttagtagaaaactcgaaagttataatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttatctttataggcatgcattttattaggtgttagtagaaaactcgaaagttataatgct 549
Query: 181 atatcttcttgaaattttaagttatttatttttcaattaaaattgtgtttaaaatgatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atatcttcttgaaattttaagttatttatttttcaattaaaattgtgtttaaaatgatta 489
Query: 241 cagcataaacatgtagtagtttgagtattgtctgaatgtttccttaaaggtccatgtgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cagcataaacatgtagtagtttgagtattgtctgaatgtttccttaaaggtccatgtgag 429
Query: 301 agaaatttgcacttattctcataatgatactacagaataatgtaaaactcatagaagaca 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 428 agaaatttgcacttattctcatgatgatactacagaataatgtaaaactcatagaagaca 369
Query: 361 gccagttgagaaagttatatttgactcatttcaggcactattatcaaaaggagttaaata 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 368 gccagttgagaaagttatatttgacacatttcaggcactattatcaaaaggagttaaata 309
Query: 421 cttctattagagcccatttatttcttgagaatagaatgttagataagaccatgaccattg 480
|||||||||||||||||||||| |||||||||
Sbjct: 308 cttctattagagcccatttatt-----------------------------tgaccattg 278
Query: 481 acctcctctctgtcacattgtattatgttcttttgat 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 277 acctcctctctgtcacattgtattatgttcttttgat 241
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
