BAC Information

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BAC

Clone NameMSMg01-356F07
Chromosome3 (Build37)
Map Location 56,184,333 - 56,184,812
singlet/doubletsinglet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F07.T7 (MSMg01no356_f07.b1)MSMg01-356F07.TJ (MSMg01no356_f07.g1)
ACCAG466498AG466499
length728749
length of high quality
(start - end)
711 (16 - 726)480 (72 - 551)
definitionCHROMAT_FILE: MSMg01no356_f07.b1 PHD_FILE: MSMg01no356_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:01 2005CHROMAT_FILE: MSMg01no356_f07.g1 PHD_FILE: MSMg01no356_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCCTCGTGTCGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATT
CCTCCATGGTCTTTGCTTCAGTTCCTGCTTCCAGCTTCCTGTCTTGAGTT
CCTGCTCTGGTTTTCCTTGATGATGAAATATAAACCAGATAAACACTTTC
CTCTATGAGTTGGTTTTGGTTAATTTTATCACAGCATCAGAAGCCTAACT
ATGACAGCAAATGAGAAACCATCTGGTATTTGTCTTTTTCAGTCTGGGTT
ACTTTACTTCATAATTTCTAAATTCAGCCATCTTTCTGAAAATACCATAC
TTTTGATTTTTATTTATGGCTGAATAAAATTCCATTTTGTGTGTTACCAC
ATTCTCATTATCCATTTATCTGTTGTTAGATATCTAAGTTGATTTTATTC
TGTTTTGTTGTTATTGTGAACAGAGCAGCAATAGACATGGATGTGCAAAT
ATATATGTGATATAGGTGGGTTACGTAGTAGTTCTCTTTTTCTCTGTTTT
GAGAAACATCACACTGATTTTCTTCGTAGTGGTATCAGTTTATAATCTCA
ACAATGATGAATAACATTTTTTTCCTTTCTCTATATCCTTGACAGTTTTG
TTGTCATTTGTTGTCTTGATGATAGCCATTCTGATATGCGTGAGATGAAG
TCTCAAAATAGATTTTATTTGCAGTTCCCTGGTGGCTGTGGATGTTTATC
AGTGGAATAGAATGGAGGATCCAGATAN
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTGAAGACAAAAGAACCTGTAAATGGG
GTAACAGGTGTGTGGGTGCCATGTGTAATTATGTACTAATAGAAGCTTCC
TTTCTTATAAGGTTGCTGATGACAGAGGGTCTGATCTAGGGCTTGTTTTC
TAATCACAGTCAACATTTCCTTCTTGAAGACATTCTATTAACGTGTCTAT
GCCACTATTTTTAGATCTATGACAAATCATATATTCTGTACTAATTCAGA
AATGTTTTTCATTAACTAGCTCTTATCAAATAAATGCTGTTCCAAGGAAG
ACACAAATCATTCTGAGAGCCCAGGGGCTGGCTCCCCTTCACACAGAAAG
GAAATTGAGTCCATTTGAGAGTTAACCCCCTAGTGAGAAACACAGGAAAT
GCCAATCTTATGACTAATCAAGAAGAAATACACAGCATTTGAGATAGACC
CACACCCCCAAAATGGCTCCCTAATTCATTTATCTATTCTTGAATTTCCT
TAAACAAATAGATGGTTCTGCAGATGTGGTAGTTCCTGCCTGTAATTCAG
TATGAATGAGGCTGAGGTCAGAGAATGGGGAGTTTAAAGCCAACTTGAGC
TACTTTTTTACAACAAATAATAAACTCCGATATAGCCCCACTTCTAATTA
CAATTGAAAAACAAATAGCTTCCGACATGCCCATACTTAAACTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f07.g1 MSMg01no356_f07.g1 CHROMAT_FILE:
MSMg01no356_f07.g1 PHD_FILE: MSMg01no356_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:01 2005
         (480 letters)



>mm_chr3_56184133_56185012
          Length = 880

 Score =  913 bits (472), Expect = 0.0
 Identities = 478/480 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttgaagacaaaagaacctgtaaatggggtaacaggtgtgtgggtgccatgtgtaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttgaagacaaaagaacctgtaaatggggtaacaggtgtgtgggtgccatgtgtaatta 621

                                                                       
Query: 61  tgtactaatagaagcttcctttcttataaggttgctgatgacagagggtctgatctaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 tgtactaatagaagcttcctttcttataaggttgctgatgacagagggtttgatctaggg 561

                                                                       
Query: 121 cttgttttctaatcacagtcaacatttccttcttgaagacattctattaacgtgtctatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cttgttttctaatcacagtcaacatttccttcttgaagacattctattaacgtgtctatg 501

                                                                       
Query: 181 ccactatttttagatctatgacaaatcatatattctgtactaattcagaaatgtttttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccactatttttagatctatgacaaatcatatattctgtactaattcagaaatgtttttca 441

                                                                       
Query: 241 ttaactagctcttatcaaataaatgctgttccaaggaagacacaaatcattctgagagcc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaactaactcttatcaaataaatgctgttccaaggaagacacaaatcattctgagagcc 381

                                                                       
Query: 301 caggggctggctccccttcacacagaaaggaaattgagtccatttgagagttaaccccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caggggctggctccccttcacacagaaaggaaattgagtccatttgagagttaaccccct 321

                                                                       
Query: 361 agtgagaaacacaggaaatgccaatcttatgactaatcaagaagaaatacacagcatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agtgagaaacacaggaaatgccaatcttatgactaatcaagaagaaatacacagcatttg 261

                                                                       
Query: 421 agatagacccacacccccaaaatggctccctaattcatttatctattcttgaatttcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agatagacccacacccccaaaatggctccctaattcatttatctattcttgaatttcctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)