BAC Information

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BAC

Clone NameMSMg01-356F22
Chromosome3 (Build37)
Map Location 68,722,978 - 68,885,328
singlet/doubletdoublet
Overlap geneIft80, Smc4, Trim59, LOC667272, Kpna4
Upstream geneEG208426, EG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik
Downstream geneArl14, Ppm1l, LOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356F22.T7 (MSMg01no356_f22.b1)MSMg01-356F22.TJ (MSMg01no356_f22.g1)
ACCAG466528AG466529
length783813
length of high quality
(start - end)		516 (35 - 550)382 (74 - 455)
definitionCHROMAT_FILE: MSMg01no356_f22.b1 PHD_FILE: MSMg01no356_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:04 2005CHROMAT_FILE: MSMg01no356_f22.g1 PHD_FILE: MSMg01no356_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,722,978 - 68,723,489)(68,884,949 - 68,885,328)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAGC
AGTTCCAAAGTGTAGTTACTCTACTGGCAATGCAAGGTTCCTCAAAACAC
CATCAAAAGCATCTGCACTGACTCTCTAGGGAGAACATCTGTGCCCTGTC
CTTAGCTGACAGGAGCAAAGGAGAAGGGCTCAATAGCACACGAGAGGTCT
GCACTAATGAAAAGCTTCTTTATAACATGTATCCCGAATAGACTGCCCAA
CACCTGTATTTTAAAGACTTGTTAAGTAAACTTTAGAAACACGTGCGAGT
AGCTCTTGTTTCTAGAACATTAAAATTTACAATTTTCCCCGGGAGCGCTT
TGCCTGAGCATCTGCAGCAGACATCTTGGTTCCGGGACCCCGCCGAGAGT
ATTCTGCACAGGTGAGAGTGTAGAATACAGAAGCTAACAGCTTCTGGGGC
AGGCCAAAGCAACTCAGCCTCGGGACAGGCCCTGTTTTGGGCCTTCGTCT
TCGGCCAGGAGGGAGGTCCTAACGCCAGATATCTGTGCACCTTCCCTGTA
AGAGGAGAGTTTGCCTGCAGAGAGTGCTCTAACCACTGAAACTCAGAGGA
GAGATCTAGTCTCCCAGGTCTGCTGATAGAGGCTAACAGATTCACCTGAG
GGACAAGCTCTTATCCGAGACCACTAAATCCTATAACTCCTCGAAATTAT
CAAATGTCTGAAGGGGAACGTAAAAATCCTTATTACATAAACACGAACCT
TTCCCCTTCCCCGAAAACAGGAATCTCCCACCC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGAAAGTAATTTTTATTTCTTCAGA
ATAGATTGGTTGTTGTTCAAGGCTTAAATAAAATTGTACATGTATATAAC
ATACCTCCAGAGAAACTTGGAAATAAACATCTAAAAAATATCATTTTAGA
AAATATCTTTTCAAATCTACTCTATATTCTTGTTTTGTTTGTTTTGAAGG
GAGATTTTGGCACTCAGAAAGAAGCTGCCTGGGCCATAAGTAACTTAACA
ATCAGCGGGAGGAAAGACCAAGTAAGTGGAACTCTTAATTATATCTCAGA
ACCAGCAAAAATAACAGTGTAGGTTATTATACTCTTATACTTAAGTGAAT
CATTATTTAAAATAATAGAATATTATATTTTGTAGATTGGTTTTGGTTTT
AGGNTATANNTGTNTTTTNNNTTTTNTTNNTTTTTTNNTTTTTTTTTTTT
TTTNTTNTTTTTTTTTTTTTTTTCCCCTTTTTTTTTTTTTTTTTTNTNTT
TTNNNTTTTTTNNTTTTNTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTT
TTTNCTTTTCTTTCTTTTCTTTCCCCCCTCCCTTTTTTCTTCCTTTCTCC
CTCCTTCTCTTTCTCTCCTTCTTTCCCCTGCCTTTCTCTTTTCTTTTTTC
CCCTTTTCTCCCCTTCCTTTTTTCTCCTTTTCCTTCCCCTTTCCTTTTTC
CCCTTCCCCTTTCTTCTTCCTCTCCTTTTTCTTTTTCTTTCCCTCTTCTC
TCCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_f22.b1 MSMg01no356_f22.b1 CHROMAT_FILE:
MSMg01no356_f22.b1 PHD_FILE: MSMg01no356_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:04 2005
         (516 letters)



>mm_chr3_68722774_68723689
          Length = 916

 Score =  967 bits (500), Expect = 0.0
 Identities = 509/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagagcagttccaaagtgtagttactctactggcaatgcaaggttcctcaaaac 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagcagtactaaagtgtagttactctactggcaatgcaaggttcctcaaaac 264

                                                                       
Query: 65  accatcaaaagcatctgcactgactctctagggagaacatctgtgccctgtccttagctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accatcaaaagcatctgcactgactctctagggagaacatctgtgccctgtccttagctg 324

                                                                       
Query: 125 acaggagcaaaggagaagggctcaatagcacacgagaggtctgcactaatgaaaagcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaggagcaaaggagaagggctcaatagcacacgagaggtctgcactaatgaaaagcttc 384

                                                                       
Query: 185 tttataacatgtatcccgaatagactgcccaacacctgtattttaaagacttgttaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttataacatgtatcccgaatagactgcccaacacctgtattttaaagacttgttaagta 444

                                                                       
Query: 245 aactttagaaacacgtgcgagtagctcttgtttctagaacattaaaatttacaattttcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aactttagaaacacgtgcgagtagctcttgtttctagaacattaaaatttacaattttcc 504

                                                                       
Query: 305 ccgggagcgctttgcctgagcatctgcagcagacatcttggttccgggaccccgccgaga 364
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccgggagcactttgcctgagcatctgcagcagacatcttggttccgggaccccgccgaga 564

                                                                       
Query: 365 gtattctgcacaggtgagagtgtagaatacagaagctaacagcttctggggcaggccaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtattctgcacaggtgagagtgtagaatacagaagctaacagcttctggggcaggccaaa 624

                                                                       
Query: 425 gcaactcagcctcgggacaggccctgttttgggccttcgtcttcggccaggagggaggtc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gcaactcagcctcgggacaggccctgttttgggccttcgtcttcggccaggagggaggtc 684

                                           
Query: 485 ctaacgccagatatctgtgcaccttccctgta 516
           ||||||||||||||||||||||||||||||||
Sbjct: 685 ctaacgccagatatctgtgcaccttccctgta 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_f22.g1 MSMg01no356_f22.g1 CHROMAT_FILE:
MSMg01no356_f22.g1 PHD_FILE: MSMg01no356_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:04 2005
         (382 letters)



>mm_chr3_68884801_68885582
          Length = 782

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaaagtaatttttatttcttcagaatagattggttgttgttcaaggcttaaataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acagaaagtaatttttatttcttcagaatagattggttgttgttcaaggcttaaataaaa 469

                                                                       
Query: 61  ttgtacatgtatataacatacctccagagaaacttggaaataaacatctaaaaaatatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgtacatgtatataacatacctccagagaaacttggaaataaacatctaaaaaatatca 409

                                                                       
Query: 121 ttttagaaaatatcttttcaaatctactctatattcttgttttgtttgttttgaagggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttttagaaaatatcttttcaaatctactctatattcttgttttgtttgttttgaagggag 349

                                                                       
Query: 181 attttggcactcagaaagaagctgcctgggccataagtaacttaacaatcagcgggagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 348 attttggcactcagaaagaagctgcctgggccataagtaacttaacaatcagcggaagga 289

                                                                       
Query: 241 aagaccaagtaagtggaactcttaattatatctcagaaccagcaaaaataacagtgtagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagaccaagtaagtggaactcttaattatatctcagaaccagcaaaaataacagtgtagg 229

                                                                       
Query: 301 ttattatactcttatacttaagtgaatcattatttaaaataatagaatattatattttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttattatactcttatacttaagtgaatcattatttaaaataatagaatattatattttgt 169

                               
Query: 361 agattggttttggttttagg 380
           ||||||||||||||||||||
Sbjct: 168 agattggttttggttttagg 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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