Query= MSMg01no356_g05.b1 MSMg01no356_g05.b1 CHROMAT_FILE:
MSMg01no356_g05.b1 PHD_FILE: MSMg01no356_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:06 2005
(501 letters)
>mm_chr3_60538739_60539639
Length = 901
Score = 866 bits (448), Expect = 0.0
Identities = 494/530 (93%), Gaps = 32/530 (6%)
Strand = Plus / Minus
Query: 4 ggaattctctaaactgcatttttataaagaaaagcataag-------------------- 43
||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ggaattctctaaactgcatttttataaagaaaagcataagcacacacacacatacacaca 739
Query: 44 ------------cacacacacacacacacacacacaccaccctgaagcaaaatactgctt 91
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cacacacacacacacacacacacacacacacacacaccaccctgaagcaaaatactgctt 679
Query: 92 atatgctgccttgttagataaagtgaacttttcctgtgtgcgtcctgactcaaaaaatga 151
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 678 atatgctgccttgttagataaagtgaacttttcctgtgtgcatcctgactcaaaaaatga 619
Query: 152 acattgttcagcagtagccagaggcagtgtgccagataccacatctggcaaagcagctat 211
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 acattgttcagcagtagccagaggtagtgtgccagataccacatctggcaaagcagctat 559
Query: 212 aactagactaacatctgattagattaacccatttctctcataatgacttcttttttgaca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aactagactaacatctgattagattaacccatttctctcataatgacttcttttttgaca 499
Query: 272 gccagaatatgaatgtgatggtcttagctgtcactctctatcccagtaagaaatgctagc 331
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gccagaaaatgaatgtgatggtcttagctgtcactctctatcccagtaagaaatgctagc 439
Query: 332 cctaggtaaataattacaaactgaatcttgaggtctactgagatcacagaaacataacct 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cctaggtaaataattacaaactgaatcttgaggtctactgagatcacagaaacataacct 379
Query: 392 ctatcttattcccacgtatgtttaaattcctcaatccagctatagaaccacaggttcagc 451
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 378 ctatcttattcccacgtatgtttaaattcctcactccagctatagaaccacaggttcagc 319
Query: 452 cagactgcatatctgccagctctgaaagatatggctattctttggggacg 501
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagactgcatatctgccagctctgaaagatatggctattctttggggacg 269
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_g05.g1 MSMg01no356_g05.g1 CHROMAT_FILE:
MSMg01no356_g05.g1 PHD_FILE: MSMg01no356_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:06 2005
(236 letters)
>mm_chr3_60397560_60398195
Length = 636
Score = 306 bits (158), Expect = 1e-87
Identities = 158/158 (100%)
Strand = Plus / Plus
Query: 1 tacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgttagtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacttccctttgatatgcatttaagctgtgttccagggatgtgcttatagtgttagtgtc 260
Query: 61 ttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagtttgcagagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgcagtttgtagggggagggtgtttataaccttcgtgtcttatgcagtttgcagagc 320
Query: 121 tgatggctctataaactgggggatttaggcatcaggac 158
||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggctctataaactgggggatttaggcatcaggac 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
