BAC Information

Click to search

BAC

Clone NameMSMg01-356K10
Chromosome3 (Build37)
Map Location 27,941,707 - 27,941,987
singlet/doubletsinglet
Overlap genePld1
Upstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356K10.T7 (MSMg01no356_k10.b1)MSMg01-356K10.TJ (MSMg01no356_k10.g1)
ACCAG466741AG466742
length752776
length of high quality
(start - end)
553 (40 - 592)274 (68 - 341)
definitionCHROMAT_FILE: MSMg01no356_k10.b1 PHD_FILE: MSMg01no356_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005CHROMAT_FILE: MSMg01no356_k10.g1 PHD_FILE: MSMg01no356_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAATAGTCCCAGCTGCGCAGAGGCCCTGTCTTGAGAAAACAAAAAAGAA
GAAGAAAAAAAGAAAGAAACTACAATTTTGCTCAAGATTCTGCACATTAA
TGAGATTACCCTATTTCACTTAGCATAATGTCCTCCACAGTCATCCAAGT
TGCTATTAATGACAGACATTTCTCCCTTTTAAAGACATAGTCATTTTTAT
TTATATGTATGTGTGTATGTCTCTCTGTGTGTATGCACATTTGTGCCAAG
GGACTCAAGGAGACCAGAAAAGGGTTTGGGATCCCTCAGAACTGCAGTTC
CGAGCAATTGTGACTCACACAACACGAACACCAGGAACCAAACTATGGTG
CTTCGTAAGTTTCCTTAACCACTTTTCAGCCTCAGTTTTTTCCTCAAAAA
AAAATGCATGCCTTTACTCCTAGCACTTGGGAGGCAGAGGCAGGGGAGGG
GAAGGGGCAGGGGCAGGGGCAGGAGCAGAGGCAGGGAGAGGGGCACGGAG
GCAGAGAGGCAAAGGCAGAAACAGAGGTGGAGACAGGCAGATCTCTGTAA
GTTGAGTCCAGCCTGGTCTACAGAGTGAGTTCCAGTACAGTCAGGACAAC
AAACAGAGAAACCTTGTCTTGAAAAACAATACCATATAACCAAACCCCTT
ATAGAATATCTTCCCCTCCCCCCCACTGTTGCGCGTGTGTTTCGTTCCCC
CC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAACATTTAAGATAAGCCCAGTAATGAATCCTTA
CTGAAGCTGCTGGCCACTGTGGAAGTGAGCCCTTGGTTGGGTTCACGGAG
CTCTGAGGAGAATGAGGTCAGGTGAGAGCTGAGAAGCAGCGGAAGTGCTG
GCCATCTGAGTTGTCACGAGAGTCTTGTGGGAAGCCCCAGGTGCTGTGAT
GACAAGGGAGTAGGGGGTGCAGCATTGGTCATGGCCCTAGGAGCCCAGTC
AAAGGTCCCCAGGGACCTTTTCTGAGCTCTGACCCCCTCAGAGAGCCAAC
AACAGACAGCAGGAGAAGATTTTGTTACTGATACAAAGTTTGTAAGGAAT
TATGCTTCAGTTACCAAATACGATGATTCTTCCTGTAAGGATATCCTGTT
GCTTTATGTTTGGCAAATGTTCGCCCGTATTTTTCCTTCTTATTCCCCTT
TTTCCCTTCCTTTTATTCCATCGGTATCTTTCTCTTACCCACTTTTCCTC
TTTCTTTTTTTCCCTTTCCCTTTCTTTTGTTCCCCTTTTAAACCTTTCCC
TTTCCTCTCCTTTGTCTGCTCTCTTCCTCACCTTTATGGTTTCCCTTTCT
TGTTTTTTGCCCCCTTCTTGTTTTCTCCCTTTTTTCTCTATCTCACTTTC
CGTCCCCTCTTTTTCTCCCCTCTTCTTTTCCTCCGTATTTTCTTATTCTC
CTTCTATTCGCCTCCCTCTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_k10.g1 MSMg01no356_k10.g1 CHROMAT_FILE:
MSMg01no356_k10.g1 PHD_FILE: MSMg01no356_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:26 2005
         (274 letters)



>mm_chr3_27941507_27942180
          Length = 674

 Score =  474 bits (245), Expect = e-138
 Identities = 269/281 (95%), Gaps = 7/281 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacatttaagataagcccagtaatgaatccttactgaagctgctggccactgtggaagtg 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 aacatttaagataagcccagtaatgaatccttaccgaagctgctggccactgtggaagtg 260

                                                                       
Query: 61  agcccttggttgggttcacggagctctgaggagaatgaggtcaggtgagagctgagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcccttggttgggttcacggagctctgaggagaatgaggtcaggtgagagctgagaagc 320

                                                                       
Query: 121 agcggaagtgctggccatctgagttgtcacgagagtcttgtgggaagccccaggtgctgt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcggaagtgcgggccatctgagttgtcacgagagtcttgtgggaagccccaggtgctgt 380

                                                                       
Query: 181 gatgacaaggg-------agtagggggtgcagcattggtcatggccctaggagcccagtc 233
           |||||||||||       ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgacaaggggttcgggagtagagggtgcagcattggtcatggccctaggagcccagtc 440

                                                    
Query: 234 aaaggtccccagggaccttttctgagctctgaccccctcag 274
           |||||||||||||||||  ||||||||||||||||||||||
Sbjct: 441 aaaggtccccagggaccagttctgagctctgaccccctcag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)