Query= MSMg01no356_n07.b1 MSMg01no356_n07.b1 CHROMAT_FILE:
MSMg01no356_n07.b1 PHD_FILE: MSMg01no356_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:40 2005
(538 letters)
>mm_chr3_144788592_144789529
Length = 938
Score = 992 bits (513), Expect = 0.0
Identities = 528/533 (99%)
Strand = Plus / Minus
Query: 5 gaattcttaccccttcccccatatttggtatcatgaacgcattcatgggcatgacattga 64
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 737 gaattcttaccccagcccccatatttggtatcatgagcgcattcatgggcatgacattga 678
Query: 65 gatctgagtccttggtcaaggccttctgaatattatgctcacttcccatctcattagcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gatctgagtccttggtcaaggccttctgaatattatgctcacttcccatctcattagcca 618
Query: 125 ttctaagtccaacactcacgttttctagactaattccttccacagtgttcttaaataatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttctaagtccaacactcacgttttctagactaattccttccacagtgttcttaaataatg 558
Query: 185 gcaaaagtaattcaactgaacaggatgccaactgagcttccttaagcgttgctttcaact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcaaaagtaattcaactgaacaggatgccaactgagcttccttaagcgttgctttcaact 498
Query: 245 ccatctttgtatttgcgacgtcttgcttgagcctaatatcagacaaataagcttgaagtt 304
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 ccatctttgtatttgcgacgtcttgcttgagcctaataacagacaaataagcttgaagtt 438
Query: 305 acttctaacacataaactggagactttttatataagacgagaacggtcaagcctgcctct 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 acttctaacacataaactggagaccttttatataagacgagaacggtcaagcctgcctct 378
Query: 365 ggactgacatgggtttgacttagatgcccctaggggagaccttaccaccaggactataag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggactgacatgggtttgacttagatgcccctaggggagaccttaccaccaggactataag 318
Query: 425 catccaggccaaacatagactgacagaggccaaaagacgtggaccttgagtacaggtagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 catccaggccaaacatagactgacagaggccaaaagacgtggaccttgagtacaggtagg 258
Query: 485 agaatagttcatctcacattttgctgctatggagtcacacgcaatgtacattt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 agaatagttcatctcacattttgctgctatggagtcacacgcaatgtacattt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_n07.g1 MSMg01no356_n07.g1 CHROMAT_FILE:
MSMg01no356_n07.g1 PHD_FILE: MSMg01no356_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:40 2005
(427 letters)
>mm_chr3_144596704_144597530
Length = 827
Score = 727 bits (376), Expect = 0.0
Identities = 414/434 (95%), Gaps = 14/434 (3%)
Strand = Plus / Plus
Query: 1 caagtatgggcctagccagtgtttatgttcatgaccagtattaaataaacttgctttaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtatgggcctggccagtgtttatgttcatgaccagtattaaataaacttgctttaat 260
Query: 61 tggacactcatggccttggtctctttcttccaattttcagatttaacaatacaattgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggacactcatggccttggtctctttcttccaattttcagatttaacaatacaattgagg 320
Query: 121 ttttagtttttagatttttagttgtttagttatttttcttttattattattttatatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagtttttagatttttagttgtttagttatttttcttttattattattttatatttt 380
Query: 181 attattattatttttattttta------gttaattttttttgtacactccattttttacc 234
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 attattattatttttatttttatttttagttaattttttttgtacactccattttttacc 440
Query: 235 ccattcatgttccactatctgaatgtttcccatctcatacctcctcccagacccctgtct 294
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccattcatgttc-------tgaatgtttcccatctcatacctcctcccaaacccctgtct 493
Query: 295 ccacaaggatatcccctcccctccacctgctcccccc-acctctctactccctgtggcct 353
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 494 ccacaaggatatcccctcccctccacctgctcccccccacctctctactccctgtggcct 553
Query: 354 acagtcccttgcgggttaggtacatcttctctgtctgaacccagcccctgcgggcctctg 413
||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 554 acagtcccttgagggttaggtacatcttctctgtctgaacccagcccctgcagtcctctg 613
Query: 414 ttgtatatgtgttc 427
|||||||||||||
Sbjct: 614 ctgtatatgtgttc 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space: 341924
Effective search space used: 341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
