BAC Information

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BAC

Clone NameMSMg01-356N15
Chromosome3 (Build37)
Map Location 8,136,453 - 8,136,732
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667801, Pkia, LOC667807, 3110050N22Rik, Il7, LOC620822
Downstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356N15.T7 (MSMg01no356_n15.b1)MSMg01-356N15.TJ (MSMg01no356_n15.g1)
ACCAG466895AG466896
length755780
length of high quality
(start - end)		552 (34 - 585)411 (67 - 477)
definitionCHROMAT_FILE: MSMg01no356_n15.b1 PHD_FILE: MSMg01no356_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:42 2005CHROMAT_FILE: MSMg01no356_n15.g1 PHD_FILE: MSMg01no356_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTCTTT
ATTACTATTATTCCAGATTTAGAATTTTATAACTAGGCTTGCTTTCCTTC
AGTGACTATTACTACGTCTCTTATCTTCATTATTACCTTGATAGCACCTC
TCCTAGGCATTCTGTAGCAAATATTTGGATTATGTCAATCACACTTATCT
GGTGTTTCTTACTATGTCTAGATCTGCAATAGGGCATTGGGTAAGCTCTC
ACAAGACAGGCATTGAACAAGTGACATTATTAATCTAGTTTATGGCTTCA
TTTTTGTAGCCCTATAATCCTAAATCTCCCTAGACTTATAAGATTTATTC
TATCCTCATGTACACACACACACACACACACACACACACACACACACAGA
GAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACACACACACACACA
CACACACACACACACACACACACACCAATACTACCGTTATGCTTTAAGAT
GACCTGTCTGAATAGAATTCATTGCTCTTGAACTGCTGAATTTATTTATT
CTGTCTCATGTACTCCATTAAAGTAGTATTATGTTACAGTAATACTAACT
TCAACCATAGATAACTGAGCATTGATACTTCCTTTTCACATGGCAGTATA
GTTAAGTAATTGTTGATTGCCAGTTTACCTCTCAAGCCATAGTCAAGAAT
CCACGTTTCTCTATCATCAAATTCCGTGGCGCCAAAGGACTTTTATAAAT
TTCTN

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGAGTGTGGGAATGATTTGGTCTCTGATTCTTG
TGCCTTCCCTTGGGCTCCTGTCCAACTTCAATGTAATAGTTTTGTGTTGT
TTTATTATATTTAAAAATATGAATGAATGAATGAATGAACGAATGAATGA
ATGAATGAATGAATGAATGAATGAATGAAAACCTTGCCACTAGAGTAAAG
CTTAATAACTGAACAGTCATTTATACCTGATAGAAGAAGGAATAGCCATT
TTCTTCAATGGATTAACTCTCTAGGACAAGCCTCATGTTCAAGTATAGCT
GACCAACTTATAATAGACTCCATAGTTTTGTTTGTGTGCTTTTATTTGGT
TACATTTTATTGGATTTTGTTTTGCTTTGTTTTGCTTTTTTCCTTTTGGA
TGTGTTTTTTAATTTTATTGATTGTGTTGTATTGAGTTTCGTTTCGTTTG
TGTTTGTTTGTTTCNTTCCCCGCCGTTTTTTACTCTATGTATCACTTCCC
CCTCACATTTTATGTTTTTTTTCCTCTTTCTCTCCTCTCCTTCTCTTCCC
TTCTTCTTTTACTTTCTATCTTTTTCCTTTCCCTCCCCCCCTTTCTCCCC
CTCCATTTTTCTTCTTTTTCACTTCTTTTTCCCTTCCCTTTTTTCATTCC
CTTCTCTTTTTTCCCCCTCTTTGTATTTCACTCTTTCACCTTTTATTTCT
TTTCCACACCCTTCTTTTCCTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_n15.g1 MSMg01no356_n15.g1 CHROMAT_FILE:
MSMg01no356_n15.g1 PHD_FILE: MSMg01no356_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:42 2005
         (411 letters)



>mm_chr3_8136123_8136933
          Length = 811

 Score =  505 bits (261), Expect = e-147
 Identities = 276/281 (98%), Gaps = 1/281 (0%)
 Strand = Plus / Plus

                                                                       
Query: 131 atgaatgaatgaatgaatgaatgaatgaatgaaaaccttgccactagagtaaagcttaat 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atgaatgaatgaatgaatgaatgaatgaatgaaaaccttgccactagagtaaagcttaat 390

                                                                       
Query: 191 aactgaacagtcatttatacctgatagaagaaggaatagccattttcttcaatggattaa 250
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aaccgaacagtcatttatgcctgatagaagaaggaatagccattttcttcaatggattaa 450

                                                                       
Query: 251 ctctctaggacaagcctcatgttcaagtatagctgaccaacttataatagactccatagt 310
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cactctaggacaagcctcatgttcaagtatagctgaccaacttataatagactccatagt 510

                                                                       
Query: 311 tttgtttgtgtgcttttatttggttacattttattggattttgttttgctttgttttgct 370
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 511 tttgtttgtgtgcttttatttggttacaatttattggattttgttttgctttgttttgct 570

                                                    
Query: 371 tttttccttttggatgtgttttttaattttattgattgtgt 411
           |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 571 tttt-ccttttggatgtgttttttaattttattgattgtgt 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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