Query= MSMg01no356_o20.b1 MSMg01no356_o20.b1 CHROMAT_FILE:
MSMg01no356_o20.b1 PHD_FILE: MSMg01no356_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:47 2005
(503 letters)
>mm_chr3_134033670_134034572
Length = 903
Score = 926 bits (479), Expect = 0.0
Identities = 494/499 (98%)
Strand = Plus / Plus
Query: 5 gaattcatcaatcagaaactatggacttgcaattgttatacttgtattcaaattcctatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaatcagaaactatggacttgcaattgttatacttgtattcaaattcctatg 264
Query: 65 ctgctaaaggacaaatggaatcttgagatctagaaatcggacttcagaatggtgataaag 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 ctgctaaaggacaaatggaatcttgagatctagaaattggacttcagaatggtgataaag 324
Query: 125 aggagaacaaagggagacaagttaaatacagcatttgaaacattaagaaatgtaggtagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggagaacaaagggagacaagttaaatacagcatttgaaacattaagaaatgtaggtagg 384
Query: 185 ctcaagaacaactgggcaagctaactcagattttgtgaaaaaggaatactgaaagttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaagaacaactgggcaagctaactcagattttgtgaaaaaggaatactgaaagttatt 444
Query: 245 tgcaatcctgtgtattttatttggagccatgaagattatcatagtcacctagaaactttg 304
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 445 tgcaatcctgtgtattttatttgaagccaggaagattatcatagtcacctagaaactttg 504
Query: 305 tagggcagtggacttctataggtatttttaaggaagcattggtcatatctgaccaagagg 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 505 tagggcagtggacttctataggtatttttaaggaagcattggtcatatctgaccgagagg 564
Query: 365 aaaaattatcagaagagactcatgagaattcacccttgagaatttaaaagtgagctattg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaattatcagaagagactcatgagaattcacccttgagaatttaaaagtgagctattg 624
Query: 425 caggaagagatgcatggacaggagtcctgaggcaatggctggtttcaagctgcggcagat 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 caggaagagatgcatggacaggagtcctgaggcaatggctggtttcaagctgtggcagat 684
Query: 485 tatattactggcattaatc 503
|||||||||||||||||||
Sbjct: 685 tatattactggcattaatc 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no356_o20.g1 MSMg01no356_o20.g1 CHROMAT_FILE:
MSMg01no356_o20.g1 PHD_FILE: MSMg01no356_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:47 2005
(436 letters)
>mm_chr3_134173289_134174118
Length = 830
Score = 746 bits (386), Expect = 0.0
Identities = 421/436 (96%), Gaps = 6/436 (1%)
Strand = Plus / Minus
Query: 1 tttatagtgctggaggaaaatgaatggcttatcaaggtgtcaatgccattaaatataagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tttatagtgctggaggaaaatgaatggcttatcaaggtgtcaatgccattaaatataagt 571
Query: 61 catgagaataagggaatgaaccaagacttgtcttaggaacaattttagacataaaagcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 catgagaataagggaatgaaccaagacttgtcttaggaacaattttagacataaaagcag 511
Query: 121 agaattgactctatatttaaaacaaaggtaagcacattcatctagaacccagataaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agaattgactctatatttaaaacaaaggtaagcacattcatctagaacccagataaaagt 451
Query: 181 ttctcaacaactcagtcttagtaaaatcgtacaagtgggtttcagttttctcctggtaca 240
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 450 ttctcaacaactc------agtaaaatcatacaagtgggtttcagttttctcctggtaca 397
Query: 241 tattgaaagtcaagattacaataaatggatggatagataggtaaacaatagaaccaacct 300
||||||||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 tattgaaagtcaaaaaaataataaatggatggatagataggtaaaaaatagaaccaacct 337
Query: 301 accaattaaaccaaaatgattaaataaactactttacataggagcagccttagaaaataa 360
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 336 accaattaaaccaaaatgattaaataaactactttatataggagcagtcttagaaaataa 277
Query: 361 gactactgccaaggctcctgttctaaagaaggaggaactcagaaaataagagagaactta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gactactgccaaggctcctgttctaaagaaggaggaactcagaaaataagagagaactta 217
Query: 421 tagataccacatagcc 436
|||||||||||||||
Sbjct: 216 aagataccacatagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 830
Length adjustment: 9
Effective length of query: 427
Effective length of database: 821
Effective search space: 350567
Effective search space used: 350567
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
