BAC Information

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BAC

Clone NameMSMg01-357B01
Chromosome3 (Build37)
Map Location 81,723,767 - 81,922,049
singlet/doubletdoublet
Overlap geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Upstream geneEG626841, Pdgfc, LOC229443
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B01.T7 (MSMg01no357_b01.b1)MSMg01-357B01.TJ (MSMg01no357_b01.g1)
ACCAG467057AG467058
length731734
length of high quality
(start - end)		641 (72 - 712)522 (80 - 601)
definitionCHROMAT_FILE: MSMg01no357_b01.b1 PHD_FILE: MSMg01no357_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:58 2005CHROMAT_FILE: MSMg01no357_b01.g1 PHD_FILE: MSMg01no357_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,723,767 - 81,724,407)(81,921,535 - 81,922,049)
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGCAATAACGAGTCTTTTGTCAGCTCTATAGTAGCAATGT
GAAGTGTAGAGCAGAGGCAATTAGCAACAATTACGGAATACTCAGCTCTT
CACAAACACTGAGAGTCTGTGCCTGCCAGTACCGTTAAAGGGAACAACAT
TCTCTTCAAAGTGCTGAAAACTGAGGAGGAAAATGCAAAAACCTTCACTA
CACTTAAATGCCCTGATAGCATTTTTAAAACATACAAACGAGCAGTCAGT
GCTTTAATCTTCAACACACACGCTGTATTGAAAAGGGTGTTCCCACCATC
CCCACCCCCACCTTGTTTGGAATGGAAACTGTCTAATAAAGAAGAACTGA
ATGCTAAATAATAGACAATTTTTCTCTTATAATGCTGGGAAGTCATGACA
GGCTTCCCACATCAGAAGAATCAACGACGACATATGCAACTGTAAAGACA
ACATACAATTTACTTAAACTCTTCCGCACGTTCACTGGAAAGATTCTCTG
GGCAGGTACTCATGTCTCTTTTCACAGTTTCACCTCAGGAATACTTTCTG
GGATGAAGAGATGATACCAGCACCTCACAGGCCAGAATGGCTTCTTTCCA
ACTACTTGATTTTACATATGGACACAGGCAAGTCTTTACGTGTTCATCAT
GGATATAAAACAAGTATTTTTCTGGTATTTN

TCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTTATCTTTAGGGTTG
ATGGCAGGAGATTTACTGCTGCCCTCTCTCATATTCTCCTGAATCTTTGT
CCTATTTTGCTTCGGGGGCTATGTATTGAAGAGGAAGGCAGATTATCAGC
TTCTGTTAACTTATGTTGATATTGGAAGTAGCTTGAGTGACTGGCCAGCC
AGAAGTTCTGGGAATTTTGGAAATCTTTTGTATACCATGTACTTTCCTTT
TCTCTCCCTATTTCCTGGAGGAGAAGCCACATGTGTGCCTTCTTGGAATC
TGGAAGGAACAGTCGGACTACTGCAAACTGCTCTTATTTTTCTCTACAAA
AAAATCCAGGGTGAGGTGTCAAGCAGTCTTAGAATGAGCTGTGCTGCTGT
TTGTTTCTGGACTCATAAGTGCAAATATCAAGCTCTGACCAGAGTGCCAT
GCAGCCGAAGAGAAAGAGTCTATAGGAATTCCTGTGGGGAGGAATACCTA
TGGCACTATGCATTGGCACTCTTCCACACTTAAGGTCATTTGCTTTACAG
CAGTAAATGCCCCAATGTTGAGTATGTTTGAAATGTGCAGTGAACACTCT
ATGCTATCAACTGGTCCAATATCTGCTTTGGTCTTTTTTAAAAATACATT
GCTTTTTCCTGAACACATATCTTGGTTGTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b01.b1 MSMg01no357_b01.b1 CHROMAT_FILE:
MSMg01no357_b01.b1 PHD_FILE: MSMg01no357_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:58 2005
         (641 letters)



>mm_chr3_81723567_81724607
          Length = 1041

 Score = 1224 bits (633), Expect = 0.0
 Identities = 639/641 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttttgtcagctctatagtagcaatgtgaagtgtagagcagaggcaattagcaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcttttgtcagctctatagtagcaatgtgaagtgtagagcagaggcaattagcaacaat 260

                                                                       
Query: 61  tacggaatactcagctcttcacaaacactgagagtctgtgcctgccagtaccgttaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacggaatactcagctcttcacaaacactgagagtctgtgcctgccagtaccgttaaagg 320

                                                                       
Query: 121 gaacaacattctcttcaaagtgctgaaaactgaggaggaaaatgcaaaaaccttcactac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaacattctcttcaaagtgctgaaaactgaggaggaaaatgcaaaaaccttcactac 380

                                                                       
Query: 181 acttaaatgccctgatagcatttttaaaacatacaaacgagcagtcagtgctttaatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttaaatgccctgatagcatttttaaaacatacaaacgagcagtcagtgctttaatctt 440

                                                                       
Query: 241 caacacacacgctgtattgaaaagggtgttcccaccatccccacccccaccttgtttgga 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caacacacacgctgtagtgaaaagggtgttcccaccatccccacccccaccttgtttgga 500

                                                                       
Query: 301 atggaaactgtctaataaagaagaactgaatgctaaataatagacaatttttctcttata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggaaactgtctaataaagaagaactgaatgctaaataatagacaatttttctcttata 560

                                                                       
Query: 361 atgctgggaagtcatgacaggcttcccacatcagaagaatcaacgacgacatatgcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgctgggaagtcatgacaggcttcccacatcagaagaatcaacgacgacatatgcaact 620

                                                                       
Query: 421 gtaaagacaacatacaatttacttaaactcttccgcacgttcactggaaagattctctgg 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 621 gtaaagacaacatacaatttacttaaactcttccgcaagttcactggaaagattctctgg 680

                                                                       
Query: 481 gcaggtactcatgtctcttttcacagtttcacctcaggaatactttctgggatgaagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaggtactcatgtctcttttcacagtttcacctcaggaatactttctgggatgaagaga 740

                                                                       
Query: 541 tgataccagcacctcacaggccagaatggcttctttccaactacttgattttacatatgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgataccagcacctcacaggccagaatggcttctttccaactacttgattttacatatgg 800

                                                    
Query: 601 acacaggcaagtctttacgtgttcatcatggatataaaaca 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acacaggcaagtctttacgtgttcatcatggatataaaaca 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no357_b01.g1 MSMg01no357_b01.g1 CHROMAT_FILE:
MSMg01no357_b01.g1 PHD_FILE: MSMg01no357_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:58 2005
         (522 letters)



>mm_chr3_81921331_81922252
          Length = 922

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   tcttatctttagggttgatggcaggagatttactgctgccctctctcatattctcctgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tcttatctttagggttgatggcaggagatttactgctgccctctctcatattctcctgaa 660

                                                                       
Query: 65  tctttgtcctattttgcttcgggggctatgtattgaagaggaaggcagattatcagcttc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tctttgtcctattttgcttcgggggctatgtattgaagaggaaggcagattatcagcttc 600

                                                                       
Query: 125 tgttaacttatgttgatattggaagtagcttgagtgactggccagccagaagttctggga 184
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 599 tgttaacttatgttgatattggaagtaccttgagtgactggccagccagaagttctggga 540

                                                                       
Query: 185 attttggaaatcttttgtataccatgtactttccttttctctccctatttcctggaggag 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 539 attttggaaatcttttgtataccatgtactttccttttctctccctctttcctggaggag 480

                                                                       
Query: 245 aagccacatgtgtgccttcttggaatctggaaggaacagtcggactactgcaaactgctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aagccacatgtgtgccttcttggaatctggaaggaacagtcggactactgcaaactgctc 420

                                                                       
Query: 305 ttatttttctctacaaaaaaatccagggtgaggtgtcaagcagtcttagaatgagctgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttatttttctctacaaaaaaatccagggtgaggtgtcaagcagtcttagaatgagctgtg 360

                                                                       
Query: 365 ctgctgtttgtttctggactcataagtgcaaatatcaagctctgaccagagtgccatgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgctgtttgtttctggactcataagtgcaaatatcaagctctgaccagagtgccatgca 300

                                                                       
Query: 425 gccgaagagaaagagtctataggaattcctgtggggaggaatacctatggcactatgcat 484
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 299 gctgaagagaaagagtctataggaattcttgtggggaggaatacctatggcactatgcat 240

                                              
Query: 485 tggcactcttccacacttaaggtcatttgctttac 519
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 tggcactcttccacacttaaggtcatttgctttac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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