Query= MSMg01no357_j19.b1 MSMg01no357_j19.b1 CHROMAT_FILE:
MSMg01no357_j19.b1 PHD_FILE: MSMg01no357_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:39 2005
(545 letters)
>mm_chr3_25923791_25924736
Length = 946
Score = 1025 bits (530), Expect = 0.0
Identities = 539/542 (99%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcctccat-cactatactattttagtatatacatagtatataaagtgctctct 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 gaattcttcctccatacactatactattttagtatatacatagtatataaagtgctctct 687
Query: 64 ctgtgacactactgttttggtgtcctctgtggaaaagtgatcatataacatggtagaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgtgacactactgttttggtgtcctctgtggaaaagtgatcatataacatggtagaata 627
Query: 124 cattatgttcttaaattttgaggcaaaagcaaacacaaacacattaacgatagatacttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cattatgttcttaaattttgaggcaaaagcaaacacaaacacattaacgatagatacttc 567
Query: 184 tttgaggattgactaataaaagcacagtgaactatctcacaattaatgagctctactgta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tttgaggattgactaataaaagcacagtgaactatctcacaattaatgagctctactgta 507
Query: 244 ccagtgatgaagtgtggatatgggggaagaaatgtcttttattattagatgtgaagaaga 303
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 506 ccagtgatgaagtgtggatatgggggaagaaatttcttttattattagatgtgaagaaga 447
Query: 304 tggaaagagaaacagaaaacataattttgttagtgacagaaaatgattgcatgtagtaac 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 tggaaagagaaacagaaaacataattttgctagtgacagaaaatgattgcatgtagtaac 387
Query: 364 atagtgaatgacaagtcgcataggaatttatgaagaagcagaccttgtcaaccatcaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 atagtgaatgacaagtcgcataggaatttatgaagaagcagaccttgtcaaccatcaagc 327
Query: 424 agaacagagtaatgctcttgccaaaagagagatagaaccccatgtagttacttattcttt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agaacagagtaatgctcttgccaaaagagagatagaaccccatgtagttacttattcttt 267
Query: 484 tttggggaaataactgagtaaatatagacgatttggtaaatcagagaaatggatcaaatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tttggggaaataactgagtaaatatagacgatttggtaaatcagagaaatggatcaaatt 207
Query: 544 gt 545
||
Sbjct: 206 gt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 946
Length adjustment: 10
Effective length of query: 535
Effective length of database: 936
Effective search space: 500760
Effective search space used: 500760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_j19.g1 MSMg01no357_j19.g1 CHROMAT_FILE:
MSMg01no357_j19.g1 PHD_FILE: MSMg01no357_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:39 2005
(443 letters)
>mm_chr3_25739752_25740594
Length = 843
Score = 841 bits (435), Expect = 0.0
Identities = 441/443 (99%)
Strand = Plus / Plus
Query: 1 ccaaggtgcttaaataaaatgtattaatggcatcagtatgaaaactctattttcagtaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaggtgcttaaataaaatgtattaatggcatcagtatgaaaactctattttcagtaag 260
Query: 61 ccagtaggtgatcctgagatgtttgagtagtggctaagaacatatattctacagcaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagtaggtgatcctgagatgtttgagtagtggctaagaacatatattctacagcaaaga 320
Query: 121 gtgagtcccagcccatggggcttagggaactctgtagacgaagaagggaaagagcataag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgagtcccagcccatggggcttagggaactctgtagacgaagaagggaaagagcataag 380
Query: 181 gaccagagatgatggagcacaccaaaacaaaacaaaacaaagcatggccctctaagtcaa 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gaccagagatgatggagcacaccaaaacaaaacaaaacaaagcattgccctctaagtcaa 440
Query: 241 cacgactgaagctcatcagccacagagatccacgcggtgtgcgcggggcctgcattggct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 cacgactgaagctcatcagccacagagatccacgcggtgtgcgcggggcctgcattgggt 500
Query: 301 ctcggtcaggtccttgctgtatgtattatggctttcagtttagtgctcttacaggattcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcggtcaggtccttgctgtatgtattatggctttcagtttagtgctcttacaggattcc 560
Query: 361 tgacgataagaaggagtaggtctctgagttgtctgcaatctcttgggaccttttccattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacgataagaaggagtaggtctctgagttgtctgcaatctcttgggaccttttccattt 620
Query: 421 gtttgacttgtccaacccagtgt 443
|||||||||||||||||||||||
Sbjct: 621 gtttgacttgtccaacccagtgt 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
