Query= MSMg01no357_j24.b1 MSMg01no357_j24.b1 CHROMAT_FILE:
MSMg01no357_j24.b1 PHD_FILE: MSMg01no357_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:40 2005
(468 letters)
>mm_chr3_143123823_143124690
Length = 868
Score = 866 bits (448), Expect = 0.0
Identities = 460/464 (99%)
Strand = Plus / Minus
Query: 5 gaattccagaatctcagagagaggagagcctccaggagacaccatgatggagcagaaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccagaatctcagagagaggagagcctccaggagacaccatgatggagcagaaaga 459
Query: 65 gtaacagagagctgtggaatgtggcatatctcctaggacagccagctcaatccatgcatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtaacagagagctgtggaatgtggcatatctcctaggacagccagctcaatccatgcatt 399
Query: 125 tcaacctttatcatataggatccaggactcctggttcataactatttaaaattgcaagta 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 398 tcaacctttatcatataggatccaggactcctggttcataactattcaaaattgcaagta 339
Query: 185 aacaaataaggccacagataggaaaacgttctagatgctacagagatcagaagtgagttc 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aacaaataaagccacagataggaaaacgttctagatgctacagagatcagaagtgagttc 279
Query: 245 ttgagttgtttggttaaagtaaaacaaaatctctctaaaacatggtcatttaaaacaaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 278 ttgagttgtttggttaaagtaaaacaaaatctctctaaaacatggtcatttaaaacagaa 219
Query: 305 tctgagcttcatttcatgtctgtaagggaatgactagctgccttaattgaaatggaaaga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tctgagcttcatttcatgtctgtaagggaatgactagctgccttaattgaaatggaaaga 159
Query: 365 cccaccccaaatgtgggggcgccattccatgacttgttttggtctgaataaaaaagaaaa 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cccaccccaaatgtgggggtgccattccatgacttgttttggtctgaataaaaaagaaaa 99
Query: 425 aaattgagccccagcatttttctccttctactttttactgttaa 468
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 aaattgagccccagcatttttctccttctactttttactgttaa 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no357_j24.g1 MSMg01no357_j24.g1 CHROMAT_FILE:
MSMg01no357_j24.g1 PHD_FILE: MSMg01no357_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:40 2005
(403 letters)
>mm_chr3_142983075_142983877
Length = 803
Score = 690 bits (357), Expect = 0.0
Identities = 378/389 (97%), Gaps = 8/389 (2%)
Strand = Plus / Plus
Query: 20 attcattcatt-------cattcattcattcattcattcaatatgctatttttaagtgcc 72
||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct: 214 attcattcattttttcctcattcattcattcattcattca-tgtgctatttttaagtgcc 272
Query: 73 tggtaggtgccatgaagtctatgttctaggtatccaggagttgaagataatggactgtat 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggtaggtgccatgaagtctatgttctaggtatccaggagttgaagataatggactgtat 332
Query: 133 ggagtttatgttctagtgagaaggagagatgacaaacaggatgtttctgtagccggttca 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggagtttatgttctagtgagaaggagagatgacaaacaggatgtttctgtagccggttca 392
Query: 193 gaatattattaagaaatgaatgatgcaccagaaaggatctcaaatgtggtacagagtatt 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gaatattattaagaaatgaatgatgcaccagaaaggatctcaaatgtggtacagagtatt 452
Query: 253 gagatgtgggaaacgtagtggaatgaagcttggagttcgttggaaagggttagactttca 312
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 453 gagatgtgggaaaggtagtggaatgaagcttggagttggttggaaagggttagactttca 512
Query: 313 agcaaagctcatggagcaaagtgttagctggccttgtagacagtgggaagaaggatgctc 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agcaaagctcatggagcaaagtgttagctggccttgtagacagtgggaagaaggatgctc 572
Query: 373 ttgtcagaagcatagattgtacagatatc 401
|||||||||||||||||||||||||||||
Sbjct: 573 ttgtcagaagcatagattgtacagatatc 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
