BAC Information

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BAC

Clone NameMSMg01-357K10
Chromosome3 (Build37)
Map Location 40,082,045 - 40,082,509
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K10.T7 (MSMg01no357_k10.b1)MSMg01-357K10.TJ (MSMg01no357_k10.g1)
ACCAG467498AG467499
length847767
length of high quality
(start - end)		93 (39 - 131)471 (73 - 543)
definitionCHROMAT_FILE: MSMg01no357_k10.b1 PHD_FILE: MSMg01no357_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:42 2005CHROMAT_FILE: MSMg01no357_k10.g1 PHD_FILE: MSMg01no357_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAACAGGATCCGCGGAATT
CCTCATTAACACCTCTTTTCCCAGGTGATTCTAGATTTTGTAGATAAAGT
GAAGAGCAGAAATGTCGCCCACCTCGATTTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTCTCTCCCCCCCCNCCACCACCACCTC
CATCTCAAACATCCATTCACCCACCATACCACAAAACCCTCACATCTTCT
CCCCCCTAACACCCACCCCCTCCATCTCCCCCCTCCCCCCCCCTCCCCAC
CCCCACCCCTCTCTTTTTTTTCCCCTCACTCCCCCCCCTCTTTCTCCCCT
CTTCTCTCCCCCCCCCTCCCCACCTAAATACACCCCTACCCCCACACACC
CCCCCCCCCCCCTATCCCCACCCACTCCCACCCAACCCCACACCCCCCCA
CTAAACTTCCACAACCCCCCCACCCCACCCTCCCCCCCACCCACTCTTTT
TCCCCTATCTCACCCCCTCTTATCCTCACCCCCCACCTCCCCCTCCCCAC
CTACCCCCCAATCCCACCCCTCCCCCCCCCCCCCTCTCCCCCCCTACCCT
ACCCCTCCCACCCCCCTCCCCCCCCCCCCCCTCCTTCACCTTCCCCTCCT
CCCCCCCTCCCCCCTATTTCTCCCACACATTACTCCCCCCTCTCCCATTC
CACCCCTCAACCCATCCCACCTCCCCCTTCCCACCTACTATCCCTTAATC
CCCCCCCTCCCTCCATTCACACCTCTCCCACCCCCCACCCATCCCCTACA
CTTCCCCCCCTACCCCCTCCCCCCCCACCTCCACCTCCCCCCCTCTC

TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAACCTGGACTTAAGTAATTATTTAAGG
TAAGTTAATTTTACTCTTCAATAATACAAATACTCCTCCTGTTAAGAATT
TAAGCTCAGATGTATGCCTTTGTTTCCCCATTTGCAGTGGAAGAGGAATA
TGGATAGAAATGATCAAGTAGCACAAGAGACAACTTAGCTATGAACATAA
ATGCTGGAAAAATATTTCAGGGCTAGATCTGAGGAAGTTCCCGGAGCCTT
CAGCATAACAATGGCAGAGACAGCTAGCTGACTACACCAATCTAAGCCAG
GTTTCACGGTCCTTTCACATCCATCAACAGATTTGACATCTACACCAGAA
CAGGGGCTCAAATACTTCCTGCTCTGTGAAATTGTCCCTATGGCATAATG
TAGAAGAACTTTATGGTTTAGGGGAGAATATTTTCTTGTCAAAAAGAAAG
CCATCATGATAAGCTTTAAATTGTCTCCTGCCCATCTTAGAATCTCTCAG
CAGAACTTGGGAAGGGGCTGGAAATGTGACCACTATAGACCCTGATGAGA
CTTATACTTGTCTCTCTTGGAAAAAAATCCCCGATTTGGAAGGTAGAAAA
TTTTTTTTTATTTACTACGAAAGTTCCCTAACCCAGTTCCTTCACACTAA
CCTTTTATAGCCCTTCGCAAAACAGGTTCGCGGGCTCCCCTCTTCCCCTT
TAATTTCCTATTGATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k10.g1 MSMg01no357_k10.g1 CHROMAT_FILE:
MSMg01no357_k10.g1 PHD_FILE: MSMg01no357_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:42 2005
         (471 letters)



>mm_chr3_40081845_40082709
          Length = 865

 Score =  868 bits (449), Expect = 0.0
 Identities = 463/471 (98%), Gaps = 6/471 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacctggacttaagtaattatttaaggtaagttaattttactcttcaataatacaaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
Sbjct: 201 aaacctggacttaagtaattatttaaggtaagttaattttactcttcaatgatac----- 255

                                                                       
Query: 61  ctcctcctgttaagaatttaagctcagatgtatgcctttgtttccccatttgcagtggaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 -tcctcctgttaagaatttaagctcagatgtatgcctttgtttccccatttgcagtggaa 314

                                                                       
Query: 121 gaggaatatggatagaaatgatcaagtagcacaagagacaacttagctatgaacataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaggaatatggatagaaatgatcaagtagcacaagagacaacttagctatgaacataaat 374

                                                                       
Query: 181 gctggaaaaatatttcagggctagatctgaggaagttcccggagccttcagcataacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gctggaaaaatatttcagggctagatctgaggaagttcccggagccttcagcataacaat 434

                                                                       
Query: 241 ggcagagacagctagctgactacaccaatctaagccaggtttcacggtcctttcacatcc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 435 ggcagagacagctagctgactacaccagtctaagccaggtttcacggtcctttcacatcc 494

                                                                       
Query: 301 atcaacagatttgacatctacaccagaacaggggctcaaatacttcctgctctgtgaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 atcaacagatttgacatctacaccagaacaggggctcaaatacttcctgctctgtgaaat 554

                                                                       
Query: 361 tgtccctatggcataatgtagaagaactttatggtttaggggagaatattttcttgtcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtccctatggcataatgtagaagaactttatggtttaggggagaatattttcttgtcaa 614

                                                              
Query: 421 aaagaaagccatcatgataagctttaaattgtctcctgcccatcttagaat 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaagaaagccatcatgataagctttaaattgtctcctgcccatcttagaat 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 865
Length adjustment: 10
Effective length of query: 461
Effective length of database: 855
Effective search space:   394155
Effective search space used:   394155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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